PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_A79A68739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29313.5 Da PI: 10.3658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 25 | 69 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W++eEd llv +v+q+G ++W+ I++ ++ gRt+k+c++rw + Traes_4AS_A79A68739.1 25 GSWSPEEDALLVALVRQHGARRWSVISASVP-GRTGKSCRLRWCNQ 69 89*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 78 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T +Ed l++ a +++G++ W+ Iar ++ gRt++++k++w++ Traes_4AS_A79A68739.1 78 PFTVQEDALIIAAQARYGNK-WADIARLLP-GRTDNSVKNHWNSN 120 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.552 | 19 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-30 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-17 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-18 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 25 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-16 | 26 | 68 | No hit | No description |
SMART | SM00717 | 1.6E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.935 | 75 | 125 | IPR017930 | Myb domain |
CDD | cd00167 | 3.44E-12 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 78 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-14 | 78 | 120 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MIPAVACVGY DRTDAMEVPS PIKTGSWSPE EDALLVALVR QHGARRWSVI SASVPGRTGK 60 SCRLRWCNQL SPAVQHRPFT VQEDALIIAA QARYGNKWAD IARLLPGRTD NSVKNHWNSN 120 LRRCQRRAKA MAAATAARVA ASSSSSGSAV RAKMQQEEQV MVMNRSPPAV VHGAVTAVID 180 DPMPMLSLTL SLGLPQMAAD KASEEAKAKA KEKTPPPVGV GGNDVRLMAA IRQVVREEVE 240 RQAGQLLYSV VMATTAARVD GASSSDHPTN GHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-36 | 25 | 123 | 5 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-35 | 19 | 123 | 54 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-35 | 19 | 123 | 54 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-36 | 25 | 123 | 5 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 8e-36 | 25 | 123 | 5 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374111 | 1e-137 | AK374111.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054K02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177202.1 | 1e-147 | transcription factor MYB44-like | ||||
TrEMBL | A0A3B6HR46 | 0.0 | A0A3B6HR46_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AS_A79A68739.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-48 | myb domain protein 70 |
Publications ? help Back to Top | |||
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