PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_9E9E5FD89.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 88aa    MW: 9649.38 Da    PI: 5.0643
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_9E9E5FD89.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09246344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +W+  E e++ +a + +G +    W+++a+ +g g+t+ +++ ++
  Traes_4AS_9E9E5FD89.2  2 AWSDAENERFERALATYGRDtagLWERVAAAVGGGKTADDVRRHY 46
                           7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.5E-8146IPR001005SANT/Myb domain
PROSITE profilePS5129310.421154IPR017884SANT domain
SMARTSM007170.0041252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4251IPR009057Homeodomain-like
CDDcd001671.59E-6246No hitNo description
SuperFamilySSF466898.97E-10357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MAWSDAENER FERALATYGR DTAGLWERVA AAVGGGKTAD DVRRHYDLLT QDIGDIESGR  60
YGYPNGGANG NTNRNNGRNR YGQPAPDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-163791189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156392.12e-39protein RADIALIS-like 3
SwissprotQ6NNN08e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A453II037e-50A0A453II03_AEGTS; Uncharacterized protein
STRINGTraes_4AS_9E9E5FD89.21e-57(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-19RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]