PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_928691B39.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 348aa    MW: 38203.9 Da    PI: 5.1919
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_928691B39.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.97.2e-3467166297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+
  Traes_4AS_928691B39.1  67 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHE 154
                            79*************************9977778***************************************8889*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            q +fe+++ iW+
  Traes_4AS_928691B39.1 155 QAVFEIARNIWR 166
                            ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-3068165IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIEFPVDPI PNPPFSSSAP VAAPASATAT  60
VGERRPLFQR LWTEEDEIVI LRAFAEFTAQ RGTAFASHQY DTEPFYEEMR RRLQLDFSKS  120
QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPNAAD  180
SEDDATITGT NAAANGDAKS PSSSKAHRRG RRRRTADLAA DASEGPQPYI SGPMPVKTED  240
SLPAFFPQVS MDGAEPVVAP VVNTESSVLT PLFKEMVRAM LGIGGCPSPL GLGAKVREQP  300
SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSTPPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509220.0AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169680.10.0probable transcription factor At3g04930
RefseqXP_020169681.10.0probable transcription factor At3g04930
TrEMBLA0A3B6HVY50.0A0A3B6HVY5_WHEAT; Uncharacterized protein
TrEMBLA0A446QZV10.0A0A446QZV1_TRITD; Uncharacterized protein
STRINGTraes_4AS_928691B39.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-44DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]