PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_92067319F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 687aa    MW: 77721.3 Da    PI: 4.7687
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_92067319F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.5e-1047154128
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            + + +yfF+k+ +  ++++   +   +  W++ g +++++  +g l g+k+t+++y+  ++++++tdW +h+y +
  Traes_4AS_92067319F.1   4 DGHALYFFHKKINLDNNEND--K---DISWQKNGPSRSIIL-DGGLRGCKETFALYT-FKNSPRRTDWKLHQYYI 71 
                            45678****99987655333..3...335************.999***********5.666778*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.707189IPR003441NAC domain
SuperFamilySSF1019412.35E-11489IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MRQDGHALYF FHKKINLDNN ENDKDISWQK NGPSRSIILD GGLRGCKETF ALYTFKNSPR  60
RTDWKLHQYY IKNTMENEGE LVLSKVFYKS QKSHCECAAK ASVQSAQDNS VTDDDSREEK  120
EDAQLEKLSV NMATESNGNN QEQMLVEMYP DQDKPCSLKH VLDTADVNHE NQINDQAETE  180
LDHMSLQDRY RILLADMRSC SARVSAEKCA LNDMGNSSMQ MDAETSGPVP KSESEEINHE  240
GTAYRECSVN DKEIPVEDTE GPVNDKAFNS SAELLLSQTP ACGDENVQLA PRNSGTYLVD  300
VKTEPALDGY AIYPSESPVK FQHSNNDGLK VSGSILECVP KDAEDSLPSL GVKSELSGYE  360
LPGLCENSFI SSMEPIVKKP HTRTLNCNGG LAPCSRQRKK RDSSEKVLEE DGYKNDEGIP  420
YPSRQKRKKK TATDSIETAL EEDAPGLLQI LLDKGIVVKE IKLYDVVEDD EMLPDCTESD  480
FQDLENVITK LFPQRTSLLK SVAKHGKGGK AIYCLACLIS LIEQSRYLQF RDCPVEWGWC  540
RDLQSFIFVF KSHNRLVLER PEYGYATYFF EILQSVPIEW QIRRMVTAMK LSSCGRTALI  600
ENRPLLIGED LSEGEAKVLQ EYGWIPNTGL GTLLNYRDRV VHDRWNEKYS TDWRMKIGKL  660
LMNGYSEGEL IITHVPLNSE EIKLENP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724600.0AK372460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153315.10.0uncharacterized protein LOC109738630 isoform X2
TrEMBLA0A3B6HSA00.0A0A3B6HSA0_WHEAT; Uncharacterized protein
STRINGTraes_4AS_92067319F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-14NAC domain containing protein 75
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]