PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_866E12EE7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 326aa MW: 36172 Da PI: 7.6975

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_866E12EE7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	185	210	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Traes_4AS_866E12EE7.1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.7E-9	182	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	184	211	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	184	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-12	185	215	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-10	185	210	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	6.8E-14	247	303	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	1.1E-8	261	302	No hit	No description
SuperFamily	SSF57850	1.77E-13	261	304	No hit	No description
SMART	SM00184	7.5E-5	262	299	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.689	262	300	IPR001841	Zinc finger, RING-type
CDD	cd00162	1.60E-8	262	303	No hit	No description
PROSITE pattern	PS00518	0	277	286	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSDGGGGEPG AGGSAPVCNF VRKPPKNIRK RPAASVGSDD EEGSGGDDSG AIAAARSKKP 60 PSTTSKLFFS SADNSHEPRR FQFESSRTIQ SSTDNRATAT LETETAYDRD ARAIRERQLK 120 QAEESLKKNP SASSSSGELY KGIHGYTDHK AGFRREHTVS GEKAGGAHGP LRASAHIRLS 180 TRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EREWDEAEKA RKRRIAMREL 240 DGSDAEAEEE DSDDDEALPF ACFICREPFV DPVVTKCKHY FCEHCALKHH SKNKKCFVCN 300 KPTLGIFNAA QEIRKKIAQD KKQQDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	3e-63	17	317	14	317	RING finger protein 113A
5z58_M	3e-63	17	317	14	317	RING finger protein 113A
6ff4_t	3e-63	17	317	14	317	RING finger protein 113A
6ff7_t	3e-63	17	317	14	317	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361400	0.0	AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
GenBank	AK371103	0.0	AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-163	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A3B6HSX0	0.0	A0A3B6HSX0_WHEAT; Uncharacterized protein
STRING	Traes_4AS_866E12EE7.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-130	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]