PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_759D8DDBB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 35717.5 Da PI: 8.9128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 113 | 159 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 + WT+eEd+ll + v++ Gg+ +W++I r ++ gR k+c++rw ++l Traes_4AS_759D8DDBB.1 113 KMWTKEEDDLLREQVRRCGGPhNWDSICRGLP-GRNSKSCRLRWCQHL 159 67******************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 47 | 6e-15 | 168 | 210 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd l+v++ + +G++ W+tIa+ + gRt++ +k+rw+++ Traes_4AS_759D8DDBB.1 168 PFTVEEDMLIVKYQAAYGNR-WSTIAEFLS-GRTDNAVKNRWNSV 210 89******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.971 | 107 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-27 | 111 | 207 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-11 | 111 | 161 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-13 | 112 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-12 | 115 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 115 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 165 | 213 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.642 | 168 | 215 | IPR017930 | Myb domain |
CDD | cd00167 | 1.21E-11 | 168 | 211 | No hit | No description |
Pfam | PF00249 | 1.8E-12 | 168 | 211 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 168 | 212 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MCYAAAEAHN SLPRLGQDCL SLQRTRLDSC SDPLRPPSVY IRRHQAAASA PRPPSPFRPL 60 ATATRHQFHP ARSHPSEARR SIQAWGVMMP TSFFQGNDAG ACDGDGSPHG VKKMWTKEED 120 DLLREQVRRC GGPHNWDSIC RGLPGRNSKS CRLRWCQHLD PRVEAVKPFT VEEDMLIVKY 180 QAAYGNRWST IAEFLSGRTD NAVKNRWNSV LRKRQEHAPS QQGQTRPWAP SAARQAAGPG 240 VTPRCLPLFP DSAEEVPEAD TSAAARKCLD LFPLAPGDIR ANAAAVAPPG DMTCGAGDPL 300 TELRLWPAPR VVFDVMPLQA YRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 115 | 214 | 30 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951919 | 0.0 | JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148042.1 | 1e-164 | transcription factor MYB44-like | ||||
Refseq | XP_020155292.1 | 1e-164 | transcription factor MYB44-like | ||||
TrEMBL | A0A3B6HP72 | 0.0 | A0A3B6HP72_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QPY3 | 0.0 | A0A446QPY3_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_759D8DDBB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-34 | myb domain protein 77 |
Publications ? help Back to Top | |||
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