PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_7530AAEB4.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 330aa MW: 35594.3 Da PI: 5.4239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_7530AAEB4.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.3e-11	255	295	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR++iN+++ L+ l+P+ +K++ +++Le+Av+YIk +q Traes_4AS_7530AAEB4.1 255 QKRREKINERLKVLQNLIPNG-----TKVDISTMLEEAVHYIKFMQ 295 89***************97.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.09	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	254	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-12	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-11	255	299	No hit	No description
Pfam	PF00010	4.4E-8	255	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEASEASWHS FDPSVAAEDS EEMARLLGVQ FFGNDQKQHP AAAPPSSMYW PGQEAADQYY 60 TSAPYCMQMQ DHASAGAGYY SHGYYDGDAT AMAGNFFVAP EEQIMADPAG FMVDLNLQFD 120 DQDDGAGTSA AACKRKFGDQ NGTQSDAVTA PKKKARSTAP PVQRKGKSSA QPKKASKGSC 180 SRGAQEESNG EATNNVQSSS NYLSDEEGSL EMTSCSNMSS ASKKTSSSRG DHGGGAKARA 240 GRGAATDPQS LYARQKRREK INERLKVLQN LIPNGTKVDI STMLEEAVHY IKFMQLQIKL 300 LSSDDMWMFA PIAYNGFNVG LDLKIAPPQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	PKKKARS

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163011.1	1e-178	transcription factor bHLH85-like
Swissprot	Q84WK0	2e-48	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A446QML5	0.0	A0A446QML5_TRITD; Uncharacterized protein
STRING	Traes_4AS_7530AAEB4.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11680	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	7e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]