PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_73658DB91.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 241aa MW: 25554.7 Da PI: 5.5381

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_73658DB91.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.7	3.5e-53	43	148	1	101
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa+ Traes_4AS_73658DB91.1 43 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAI 130 89***997665555689***************************************************************** PP NF-YC 84 trtdifdflvdivprdel 101 +rtd+fdflvdivpr+e Traes_4AS_73658DB91.1 131 ARTDVFDFLVDIVPREEA 148 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.21E-32	28	139	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.5E-37	59	130	IPR009072	Histone-fold
Pfam	PF00808	2.7E-20	67	130	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MENHQLPYTT QPPATGASGA PLPGVPGPPP VPHHHLLQQQ QAQLQAFWAY QRQEAERASA 60 SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT 120 LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFA AGGVGAAGGG PAAGLPYYYP 180 PMGQPAAPMM PAWHVPAWEP AWQQGGAGVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS 240 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-51	51	145	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU902795	0.0	GU902795.1 Triticum monococcum nuclear transcription factor Y subunit C11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154990.1	1e-117	nuclear transcription factor Y subunit C-2-like
Swissprot	A6BLW4	2e-96	NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A3B6HTP8	1e-173	A0A3B6HTP8_WHEAT; Uncharacterized protein
TrEMBL	A0A446QQA3	1e-173	A0A446QQA3_TRITD; Uncharacterized protein
STRING	Traes_4AS_73658DB91.1	1e-174	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7345	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-63	nuclear factor Y, subunit C4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]