PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_4A418E6B5.4

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 1002aa MW: 114438 Da PI: 6.2829

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_4A418E6B5.4	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.6e-18	106	211	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 Y++YA ++GF+ ++++ ++ +g +++tf C++ gk++e ek+ r+++ ++tgCka+l ++ + Traes_4AS_4A418E6B5.4 106 LYKAYAFRMGFHAVRRTCHNY--EGIRYRSTFSCTQAGKSREGAAPsedsgaryplrnkrgaatPEKRARRTTAEKTGCKAMLIIRDK 191 7*********999998887..7889********99988778999********9877777888899********9 PP FAR1 72 k.dgkwevtkleleHnHela 90 + +++w+v+ ++leHnH+++ Traes_4AS_4A418E6B5.4 192 RvNDRWKVEFVDLEHNHPCT 211 99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-16	106	211	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-22	338	432	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	620	656	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0029	631	658	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MEEGSERPPH SRATRAQNPS CEEEEAAGLV KDEIADDLNA DPAEDEDEDE VVVEEGEDEV 60 LVASDDDDGA ADGAGGDDDF VPRTLEEALV PRVGTVFDSV DEAFSLYKAY AFRMGFHAVR 120 RTCHNYEGIR YRSTFSCTQA GKSREGAAPS EDSGARYPLR NKRGAATPEK RARRTTAEKT 180 GCKAMLIIRD KRVNDRWKVE FVDLEHNHPC TPDMVRFLKS YREMPESAKK KAKITVEMDE 240 TVEKSLSEIA ETRKFPTRPK RSVSGGAAAG GLRFNRTDSF VQRFGDEDLI AVKKFIEMMQ 300 EKKPNFIHSW DLDQESRMKN FFWTDLRSQA QYRYFGDVIS LDVMYLQHSR ASLPLATLLG 360 VNNHGHLVLL GCGLLSKDSK ENYVWLLKRW LSCMNGKPPE AITTSYSDVV AEAVSEVLPD 420 ARHRFCFWHI LKKLQENVGR THEKEAISLR FKEVVYDTVT LTDFEKEWEA MVEHYKLKDN 480 EWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD GVVTSKTTLP VFLEQYETTL 540 RGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LLELYTVPMF QAFQDEIKQL MHVICKEVDR 600 SGNSITYMVS ELIQGKKVDY TVVYNNSDKD VWCICRSFPS RGILCSHALS VLKQENVLML 660 PSKYILSRWR KDFRIIHASA SPNSVALQRD LSIFDDLYVR GHEYLEDVID IGAREPELKE 720 FVLSAMKEAK GKLVRPGQTQ QGDQRVDVNM AVTGQVSADR RVDVNMASNT TSIIHRDRRV 780 EANMPLNTRA LVHEDNMASN TTSLIHGDRR ADMEMQTPHL IHREGRVDMN MTAPHLMQRE 840 RRVDVNMTSP HLIHGDRRVD MNLGSPHFIH SDRGVDMNLT SPHLIHGDRR VDMNMASPHL 900 IHGDRRVDMN MTSPHMIHGD TRVDMNMVST SQDDAMHTFD LVNVNLESSL PMAATDFMQM 960 HPHPPVYHPK QLLNMRDQVM DSNKRSNVET NTYFIGGGMH VG

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MEEGSERPPH SRATRAQNPS CEEEEAAGLV KDEIADDLNA DPAEDEDEDE VVVEEGEDEV  60
LVASDDDDGA ADGAGGDDDF VPRTLEEALV PRVGTVFDSV DEAFSLYKAY AFRMGFHAVR  120
RTCHNYEGIR YRSTFSCTQA GKSREGAAPS EDSGARYPLR NKRGAATPEK RARRTTAEKT  180
GCKAMLIIRD KRVNDRWKVE FVDLEHNHPC TPDMVRFLKS YREMPESAKK KAKITVEMDE  240
TVEKSLSEIA ETRKFPTRPK RSVSGGAAAG GLRFNRTDSF VQRFGDEDLI AVKKFIEMMQ  300
EKKPNFIHSW DLDQESRMKN FFWTDLRSQA QYRYFGDVIS LDVMYLQHSR ASLPLATLLG  360
VNNHGHLVLL GCGLLSKDSK ENYVWLLKRW LSCMNGKPPE AITTSYSDVV AEAVSEVLPD  420
ARHRFCFWHI LKKLQENVGR THEKEAISLR FKEVVYDTVT LTDFEKEWEA MVEHYKLKDN  480
EWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD GVVTSKTTLP VFLEQYETTL  540
RGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LLELYTVPMF QAFQDEIKQL MHVICKEVDR  600
SGNSITYMVS ELIQGKKVDY TVVYNNSDKD VWCICRSFPS RGILCSHALS VLKQENVLML  660
PSKYILSRWR KDFRIIHASA SPNSVALQRD LSIFDDLYVR GHEYLEDVID IGAREPELKE  720
FVLSAMKEAK GKLVRPGQTQ QGDQRVDVNM AVTGQVSADR RVDVNMASNT TSIIHRDRRV  780
EANMPLNTRA LVHEDNMASN TTSLIHGDRR ADMEMQTPHL IHREGRVDMN MTAPHLMQRE  840
RRVDVNMTSP HLIHGDRRVD MNLGSPHFIH SDRGVDMNLT SPHLIHGDRR VDMNMASPHL  900
IHGDRRVDMN MTSPHMIHGD TRVDMNMVST SQDDAMHTFD LVNVNLESSL PMAATDFMQM  960
HPHPPVYHPK QLLNMRDQVM DSNKRSNVET NTYFIGGGMH VG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251205	0.0	AK251205.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf106g10, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199937.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A446QQI8	0.0	A0A446QQI8_TRITD; Uncharacterized protein
STRING	Traes_4AS_4A418E6B5.4	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-83	far-red elongated hypocotyls 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]