PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_45B416B25.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 287aa MW: 31311 Da PI: 8.7028 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 5.8e-10 | 85 | 139 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l Traes_4AS_45B416B25.1 85 KRAKRILANRQSAARSKERKARYMTELERKVQTLQTEATTLSAQLTLFQRDTTGL 139 9****************************************99988776665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.3E-15 | 81 | 145 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.668 | 83 | 146 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.84E-11 | 85 | 136 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-10 | 85 | 139 | No hit | No description |
Pfam | PF00170 | 1.0E-8 | 85 | 139 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.32E-20 | 86 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDIEKISSGP AAGSDRDRDR AAETSSPPRP KHRYSSSVDG SGLFSAAGSA ARRDAAAAQA 60 LADVLEAKKA MSPEQLAELA AIDPKRAKRI LANRQSAARS KERKARYMTE LERKVQTLQT 120 EATTLSAQLT LFQRDTTGLS SENAELKIRL QAMEQQAQLR DALNDALKQE VERLKMATGE 180 MSNSSDAYSV GLQHVLYNSS FFPQSQQNTA QHQGGARFPP PFHLPHPNVP NHQMLSHPNT 240 LSDIMQQDHL ARLQGLDISK GHPVVKSESS SISASESSIE IRCNPSC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369285 | 0.0 | AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175873.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-143 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A446QVV6 | 0.0 | A0A446QVV6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_45B416B25.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 3e-69 | bZIP family protein |
Publications ? help Back to Top | |||
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