PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_3B4E00416.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 754aa    MW: 82938.7 Da    PI: 5.0479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_3B4E00416.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-084385347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
  Traes_4AS_3B4E00416.2 43 AWTRQEEESFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 85
                           6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.64E-93889IPR009057Homeodomain-like
PROSITE profilePS5129312.5823990IPR017884SANT domain
SMARTSM007179.0E-64088IPR001005SANT/Myb domain
CDDcd001671.02E-54386No hitNo description
PfamPF002496.9E-64385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-44388IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MEKEVCEEMS PLPQPVDLPD ATAPSASDPS QKPAKKATRQ WAAWTRQEEE SFFNALRQVG  60
KNFEKITLRV QSKNKDQVRH YYYRLVRRMK KLLGPGFSLD ARNSKDTIAA MLRWWSLLEK  120
FSCSASKLHL KPRRFKTFVD ALGNQLLKDR KRTRRKCSLG DTRLSSSSPV LSKTPGNQSF  180
AVGLLPMDAQ NGSKGASSKG AFMKRVAEPN SNKSGVIRGD LSATRTVRQK RRAGGAGACA  240
AYKKWERAAM AGVSLVADAA EELERKMTTQ NLSCNADATV LASSPNNVST VDADVGTNHM  300
KEADPQAPSK LKLQLFPINE ATRKALEKDD HNPHLELTLS SKKKMSSVLE HLNRKWGNSN  360
IACGELVLFP YCAHQEDLAT YQRWTTQDTV AVADVFFSVN SPSIFRLRYG WFSLAELEAG  420
LSEISLTRFE NCMIPEDIQV KSSSEACVQK DGTLPSDFTS EQSSNNSKDQ SALLLGTPSS  480
TGKNAAEEPS INTFPSQSGD HNQEQVPANQ AFEVDPQMDC LAISEVDWAD TLTDISVGYL  540
LTEASKAANL DCEVTSIAKN PLFDENLCSY DSFDAAVALH ASRYQAAEQP AQTSHSTIWG  600
AEETCDEFSF MLATARKQQG LNTSASSPPD SDNEVHSSNS EGFQGFLQDL AGGDTLGNPC  660
ADDVKAMEEL CARSPPQSDN DFGLKDQPLD DAFWPESLGP LDLDIPPIRS LADEFILGDS  720
QNSWSRMMEN SMDAFRNMSF FVSDNNDSVL PPIM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1540480.0KC154048.1 Leymus chinensis MYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154862.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A3B6HSJ20.0A0A3B6HSJ2_WHEAT; Uncharacterized protein
TrEMBLA0A446QQA20.0A0A446QQA2_TRITD; Uncharacterized protein
STRINGTraes_4AS_3B4E00416.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-163TSL-kinase interacting protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]