PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_2718699A7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 29512.8 Da PI: 10.5422 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 4.1e-07 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Traes_4AS_2718699A7.1 77 YVCEICGQGFQREQNLQMHRRRH 99 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.0009 | 173 | 195 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ Traes_4AS_2718699A7.1 173 WVCARCAKGYAVQSDYKAHLKTC 195 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.9E-6 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.72E-7 | 76 | 99 | No hit | No description |
PROSITE profile | PS50157 | 11.759 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5E-4 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.038 | 77 | 95 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 137 | 167 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.72E-7 | 168 | 193 | No hit | No description |
SMART | SM00355 | 270 | 173 | 200 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MALVKSHHQM LASSSTSSSS PSSQQQPPPP PPPLAPPPPA TDQPSPAKRK RRPPGTPDPD 60 AEVVALTPRT LLESDRYVCE ICGQGFQREQ NLQMHRRRHK VPWRLVKRAP APSAGEDGGA 120 GTAGGAGATT VPRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR RQWVCARCAK 180 GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSGRMRGEA GAVPSALPVL 240 RPVVIRHPAP GVPSTPPPEL QLLPVATKAP VNATP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-18 | 169 | 237 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 1e-18 | 169 | 237 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376150 | 0.0 | AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165864.1 | 1e-155 | protein indeterminate-domain 16-like | ||||
Swissprot | F4IPE3 | 4e-99 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3B6HPR1 | 0.0 | A0A3B6HPR1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AS_2718699A7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 3e-89 | C2H2-like zinc finger protein |