PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_231DDE5DB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 43422 Da PI: 7.7714 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.8 | 1.8e-15 | 254 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Traes_4AS_231DDE5DB.2 254 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 313 789******************544454478446*************************98 PP | |||||||
2 | AP2 | 42.2 | 2e-13 | 358 | 402 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ Traes_4AS_231DDE5DB.2 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAA 402 9***************988532...5*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-17 | 254 | 323 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-19 | 254 | 323 | No hit | No description |
SMART | SM00380 | 2.7E-28 | 255 | 327 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.8E-12 | 255 | 313 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.729 | 255 | 321 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 255 | 322 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-12 | 356 | 402 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.12E-16 | 356 | 403 | No hit | No description |
SMART | SM00380 | 2.3E-13 | 357 | 403 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.081 | 357 | 403 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 357 | 403 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 358 | 402 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG 60 GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY DASHADQLKY HHHQDVHHAY 120 PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM 180 AAAPMYSSAA GFDGSANMSI SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP 240 VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA 300 ARAYDLAALK YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055767 | 1e-173 | BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186422.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
TrEMBL | A0A3B6HQD8 | 0.0 | A0A3B6HQD8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QK88 | 0.0 | A0A446QK88_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_231DDE5DB.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-97 | AP2 family protein |
Publications ? help Back to Top | |||
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