PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_1EA23DE08.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25530.5 Da PI: 6.571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k Traes_4AS_1EA23DE08.1 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 114 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111 | 7.9e-36 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eq+++LE++F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e +L+e Traes_4AS_1EA23DE08.1 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKE 148 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l+e Traes_4AS_1EA23DE08.1 149 RLAE 152 9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.633 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-15 | 59 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-16 | 60 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.24E-15 | 61 | 116 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-16 | 61 | 114 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.1E-6 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.1E-6 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSSEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA SGEGGGDDAA 60 KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK QVAVWFQNRR ARYKSKLIEE 120 EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA MAASAAATGG GGGSSPSSSS 180 FSTVTAMVGG QQFGMEEVET DLTYMSEYAY TNYMMDLAAG GYLGGVYDQF S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 63 | RRRARQAASGEGGGDDAAKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365295 | 0.0 | AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08. | |||
GenBank | AK370253 | 0.0 | AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157992.1 | 1e-113 | homeobox-leucine zipper protein HOX12-like | ||||
Swissprot | Q10QF2 | 4e-85 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | A0A3B6HS89 | 1e-167 | A0A3B6HS89_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QM08 | 1e-167 | A0A446QM08_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_1EA23DE08.1 | 1e-168 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-29 | homeobox protein 40 |
Publications ? help Back to Top | |||
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