PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_124CCE880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 841aa MW: 94250.6 Da PI: 8.1347 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 36.3 | 8e-12 | 141 | 177 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgp g +tLCnaCG+ ++k +l Traes_4AS_124CCE880.2 141 CLRCGISAnaTPHMRRGPMGRRTLCNACGIAWAKGKL 177 5567766667***********************9876 PP | |||||||
2 | FAR1 | 86 | 5.7e-27 | 211 | 296 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrks+s ks ++ + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++ +k ++ +k+++++++ +HnH+ Traes_4AS_124CCE880.2 211 EFYNRYAGHIGFSVRKSSSDKS-ADNITRSRTFVCSREGFRKDKKGA-NEVKRPRPETRIGCPARMIIKITSYNKYRIAEFVADHNHQ 296 6********************9.555699**************9999.99*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.04E-9 | 135 | 185 | No hit | No description |
SMART | SM00401 | 4.4E-6 | 135 | 188 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.7E-10 | 139 | 177 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.5E-9 | 143 | 177 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 7.4E-24 | 211 | 296 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.5E-26 | 420 | 514 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 688 | 735 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-4 | 688 | 732 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.8E-4 | 710 | 737 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
RAPGIPSPTP NPNPAPCPAP APKTLALNPR IQPIPPPIPA ISRRSGDPPD LDRFLRRRPT 60 LGCLGCPESS VLVHFLSRTD TPIPSILQSV AGLFPAGCLF PAKFRFSGSC LVSMEFEGEG 120 GIGVGVGDGE GDDRVDEPTR CLRCGISANA TPHMRRGPMG RRTLCNACGI AWAKGKLRKV 180 IDSDTPIDDV PVAKMVPEVG MEFDNEDKAY EFYNRYAGHI GFSVRKSSSD KSADNITRSR 240 TFVCSREGFR KDKKGANEVK RPRPETRIGC PARMIIKITS YNKYRIAEFV ADHNHQPAPP 300 STMHMLRSQR VLTEVQTTEC NSSEDSTTPS RFSGGSLGQQ AGAFRNVNFL PADYRSSLCS 360 KRTKNMQPGD AGGVVKYLQS MQLNNPSFFY AVQLDEDDKL TNIFWADSKS RVDFSYFSDV 420 VCLDTTYKIN AHGRPLTLFL GVNHHKQISI FGAALLYDES VESFKWLFDT FKIATDGKQP 480 KTILTDQSIA ASAAISAVWP STIHCLCPWQ VYQNTVKHLN HIFQGSKTFA KDFSRCVYDY 540 EDEEGFLVGW RTMLEKYDLR NNEWLHKLFE DRDKWASAYN RHVFTADING SLQLECVSNV 600 LRKYLSPQFD FLSFFKHYER VLDEHRYAEL QADFHASQSF PRIPPSKMLK QAANIYTPVV 660 FEKFRREFEM FVDSVIYSCG ESGTASDYRV AVTDRPGEHY VRFDSSDLSV ACSCKKFESM 720 GIQCCHVLKV LDFRNIKELP QKYLMRRWTK DAKSADRGNQ EFLSDGALQT PSSRLNVPVP 780 IINQPQSHLN NDHDHAASVS SFGHQALQGN ANGNQGYTPL AGMNQQPFVG GFPLNHETGF 840 E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 57 | DRFLRRR |
2 | 259 | 263 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249301 | 0.0 | AK249301.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33i23, mRNA sequence. | |||
GenBank | AK251885 | 0.0 | AK251885.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf133l23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197214.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020197215.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A446QK48 | 0.0 | A0A446QK48_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_124CCE880.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-115 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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