PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_094442636.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 318aa    MW: 34219.3 Da    PI: 4.9797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_094442636.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18102149455
                    AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +G+r+++ +g+W+AeIrdp     + +r++lg+f+ta++Aa+a++ a+++l+g
  Traes_4AS_094442636.2 102 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 149
                            7******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.103100157IPR001471AP2/ERF domain
SMARTSM003804.6E-32100163IPR001471AP2/ERF domain
PfamPF008478.1E-12101149IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-21101158IPR016177DNA-binding domain
PRINTSPR003671.1E-9101112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-30102158IPR001471AP2/ERF domain
CDDcd000182.47E-29103158No hitNo description
PRINTSPR003671.1E-9123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MCGGAILAQL IPPSAGRAPK QVAAGGVAPK NGGMSKRHHS STPDVDDFEA AFEDFEDDVD  60
LQAEDDGDDH AVFASKPAFS TAYYDGRAAQ AASRKKSVRR LHGIRQRPWG KWAAEIRDPH  120
KGTRVWLGTF DTADDAARAY DVAARRLRGI KAKVNFPDAA RAGARSRRAS RRTAQKPQCP  180
PVRTTAYSAT AAAHAHVVQA EQDAMMIKPE LMEFFDADAF VDLTAAVAAL PPVTGAKKPM  240
VDEDSSDRSG GCAMLVFADE LGFDPFTLFQ LPCSDTYESI DSLFAGDAVI QDALGVDTGM  300
EGVSLWSFEE FPMDSAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19102163769ATERF1
3gcc_A2e-19102163769ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023830.0DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175335.11e-146ethylene-responsive transcription factor 1-like
TrEMBLA0A411JJW40.0A0A411JJW4_WHEAT; Ethylene response factor
STRINGTraes_4AS_094442636.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-20related to AP2 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]