PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4AS_03A679D8F.1 | ||||||||
Common Name | NFYC-B6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 67aa MW: 7506.93 Da PI: 10.7105 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.8 | 6.4e-15 | 7 | 63 | 19 | 75 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l s+ + ++ +tl+ Traes_4AS_03A679D8F.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDHSYKITLQSGAKTLN 63 679******************************************999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.19E-15 | 3 | 67 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-24 | 3 | 67 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-17 | 8 | 67 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 67 aa Download sequence Send to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDHS YKITLQSGAK 60 TLNSFHL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-22 | 2 | 67 | 5 | 70 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM078730 | 1e-108 | KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156751.1 | 9e-39 | dr1-associated corepressor-like | ||||
Swissprot | Q14919 | 3e-20 | NC2A_HUMAN; Dr1-associated corepressor | ||||
TrEMBL | A0A0A7LUP0 | 4e-39 | A0A0A7LUP0_WHEAT; CCAAT-binding transcription factor C | ||||
TrEMBL | A0A446QXJ7 | 4e-39 | A0A446QXJ7_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453HYT8 | 1e-39 | A0A453HYT8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AS_03A679D8F.1 | 1e-41 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-35 | nuclear factor Y, subunit C11 |
Publications ? help Back to Top | |||
---|---|---|---|
|