PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_F853C8660.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 336aa MW: 39025.7 Da PI: 6.7425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_F853C8660.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.3e-55	9	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++e+++wyfFs++dkky+tg+r+nrat++g+Wk Traes_4AL_F853C8660.1 9 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcriGPEEEQSDWYFFSHKDKKYPTGTRTNRATAAGFWK 95 69**************************.99**********95343322335669*********************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk++++ k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle Traes_4AL_F853C8660.1 96 ATGRDKPIYA-KHCLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 139 ******.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-61	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	59.189	9	159	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGSNTQPQVP PGFRFHPTDE ELVDYYLRKK VASRRIDLNV IKDVDLYKIE PWDLQEKCRI 60 GPEEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KPIYAKHCLV GMRKTLVYYK 120 GRAPNGQKSD WIMHEYRLET NENGPPQEEG WVVCRVFKKR LPTTRRDLDH DAPCWYVDDD 180 GPFMHDLNSP MRGMPPHHSM ALQEQHLQML NSTYKRELKL QYQMPNHHHV LNTIPHELES 240 PSSFHSLLVS PDDHQINVHH AQHHHVQLID HAVDDQAATD WRVLDKFVAS QLSNDAAKGV 300 DYAHEGDILQ LNEKAQELVT DYASTSTSSS QVDPWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	5	160	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	5	160	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	5	160	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	5	160	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	5	160	16	169	NAC domain-containing protein 19
3swm_B	3e-50	5	160	16	169	NAC domain-containing protein 19
3swm_C	3e-50	5	160	16	169	NAC domain-containing protein 19
3swm_D	3e-50	5	160	16	169	NAC domain-containing protein 19
3swp_A	3e-50	5	160	16	169	NAC domain-containing protein 19
3swp_B	3e-50	5	160	16	169	NAC domain-containing protein 19
3swp_C	3e-50	5	160	16	169	NAC domain-containing protein 19
3swp_D	3e-50	5	160	16	169	NAC domain-containing protein 19
4dul_A	2e-50	5	160	13	166	NAC domain-containing protein 19
4dul_B	2e-50	5	160	13	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160525.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-115	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A3B6I6H1	0.0	A0A3B6I6H1_WHEAT; Uncharacterized protein
STRING	Traes_4AL_F853C8660.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-104	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]