PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_F5C91EC4A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 898aa    MW: 98556.1 Da    PI: 5.5503
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_F5C91EC4A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.5e-29539589252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Traes_4AL_F5C91EC4A.1 539 EKNVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 589
                            89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.177524609IPR003035RWP-RK domain
PfamPF020421.1E-25541589IPR003035RWP-RK domain
SuperFamilySSF542777.85E-22790879No hitNo description
Gene3DG3DSA:3.10.20.2401.5E-21794875No hitNo description
SMARTSM006668.3E-21796878IPR000270PB1 domain
PROSITE profilePS5174523.209796878IPR000270PB1 domain
PfamPF005641.9E-16797877IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MDENGTPDYS GGGSDMDLLM LSGFDDLDSF PKLGAGPSFS DGILSSFSVS PAQQVTHISP  60
SPPSVDAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVTLTE KMLRALAMLK  120
EASTAGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG  180
LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM  240
TQEKDNFCSE MDNLSNALQS VQLSTVQART HPQSLTRNQQ SVLTEILDVL KAVCHTHMLP  300
LALAWIPVCP NSNLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP  360
LEKGQGVAGN AILSNHPFFS SDVREYDMHD YPLVHHARKF GLHAAVAIRL RSTYTGNDDY  420
VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKENTIIMR SAIRCSSSDV  480
SINSCDQIDV SSEVKKYAKF EPGSTSENFQ NCSSTGKNVS LTVLQESTSD RLKIRSSTEK  540
NVSLKVLQQY FAGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKIKKVN RSLQKIQNVI  600
STVHGVEGEI KYDPATGCIV SSVSHTEESS MMMNVEHQSS DSLPIECHKF QPDYDAYQRE  660
HLGQAVLHKA QNDKRSETHI NLNPGGLCRN SNFGRTSKGP RCQDASNSSY LTKEMISADG  720
TDMWVEGAEQ KNVVWNSISM PQQCKIEIET DKSNTIVEQS LASSSSMTDC SSGGTSSDGT  780
LKKCFKSRSV DGSNASIVVK AAYKDDTVRL KLLPSMKYEN LLEEIAKRLK LSVGAFQLKY  840
KDDEDEWVIL ASDADLQECL DVLDTTGSRI VKIQVRDVPC ATRAASGSSS ISLVDRSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492770.0AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152944.10.0protein NLP2-like
TrEMBLA0A446R5L80.0A0A446R5L8_TRITD; Uncharacterized protein
STRINGTraes_4AL_F5C91EC4A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]