PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_F023A8691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 573aa MW: 64609.2 Da PI: 5.8592 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318 | 2.1e-97 | 195 | 564 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lL++cA+av + d + a +lL++++++asp+gd++q la f+e+L+arl++++s++y l+++ ts ++++++a++lf ++ Traes_4AL_F023A8691.1 195 HTLLIHCAKAVMD-DRRSAGELLKEIKQHASPTGDATQWLAYWFAEGLEARLTSTGSQVYGLLTAECTS---TVRHMQAYQLFMSTCC 278 679********97.8999******************************************999998888...899************* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 + k+++l aN+aI +a+ g +r+Hi+D+++ G+QWp Ll+ LasR++gpp++RiT ++ p +g ++ +e++g+rL+++A+elgvp Traes_4AL_F023A8691.1 279 FRKVAFLFANKAIFNAAVGRSRLHIVDYGLHCGFQWPELLRWLASRDGGPPEVRITHIELPLPGvyPEKHMEQIGNRLTDIAQELGVP 366 *************************************************************99999********************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 f++++ ++ +++++ +e+L+ +p+EalaVn +++ +l+desv ++s +rd+vL + +++P+v+v + + ++ ++ Fl rf eal Traes_4AL_F023A8691.1 367 FKYRA-IMAQWQTICVEDLDKEPDEALAVNDQFNFRTLMDESVVIASpnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREAL 452 *****.6999*********************************9998889***********************99.789********* PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 y+salfd+l+a++pres+ r +Er ++g+ + n+va eg++r+er et+++W+ r ++aG++++pl+ +++k a ++ + + + Traes_4AL_F023A8691.1 453 FYHSALFDMLDATMPRESKLRLALERDVFGWMVLNAVAYEGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMATDMVMGDYHKDF 540 *************************************************************************99998888877677* PP GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373 ++e++++l++gWk+r L++ S W Traes_4AL_F023A8691.1 541 DIDEDHQWLLQGWKGRILYAHSTW 564 ************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.713 | 168 | 545 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.1E-95 | 195 | 564 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MADDDSNCFA VQDHLALPYI TQILMEEEDD VDEDSPALLK AQRPFAQILS SSMHASTLMA 60 DQGGALAIDV HSPSSPIFKF NGVDEVHSLM LLPDADYSTH MFSIAFLRGM EEANKFLPRN 120 CELTTTGGHD QPKEKSGRGR KDRHGEVEAD VSRTSRLVEV GAGEVFDQML IAHGNETGNS 180 NKKGRKSKTR VVDLHTLLIH CAKAVMDDRR SAGELLKEIK QHASPTGDAT QWLAYWFAEG 240 LEARLTSTGS QVYGLLTAEC TSTVRHMQAY QLFMSTCCFR KVAFLFANKA IFNAAVGRSR 300 LHIVDYGLHC GFQWPELLRW LASRDGGPPE VRITHIELPL PGVYPEKHME QIGNRLTDIA 360 QELGVPFKYR AIMAQWQTIC VEDLDKEPDE ALAVNDQFNF RTLMDESVVI ASPNPRDAVL 420 GNISKMKPDV FVQSTVNGSY GTFFLSRFRE ALFYHSALFD MLDATMPRES KLRLALERDV 480 FGWMVLNAVA YEGEDRVERG ETYKHWQIRN QRAGLRQLPL NRETVKMATD MVMGDYHKDF 540 DIDEDHQWLL QGWKGRILYA HSTWVAEGAS SHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-42 | 198 | 564 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172172.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | M8AML1 | 0.0 | M8AML1_TRIUA; Uncharacterized protein | ||||
STRING | Traes_4AL_F023A8691.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-125 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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