PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4AL_CC5803BED.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 382aa MW: 41459.1 Da PI: 9.7745 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 108 | 155 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Traes_4AL_CC5803BED.1 108 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 155 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4.1e-19 | 161 | 205 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ Traes_4AL_CC5803BED.1 161 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 205 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 99 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.087 | 103 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.7E-30 | 107 | 202 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-14 | 107 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 108 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-11 | 110 | 155 | No hit | No description |
PROSITE profile | PS51294 | 29.51 | 156 | 210 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 159 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-18 | 160 | 208 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 161 | 205 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-14 | 163 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MAQRDPRQWG PAPLHPHPPP PRIKPTTHPR LPSLSPPRSL ALKKLARTHA PPTPHRSSFP 60 SDPPTATTAY IISPLLVCGA AGSCLQRTYV PAGGMGRSPC CEKAHTNKGA WTKEEDQRLI 120 AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHELLG 180 NKWSLIAGRL PGRTDNEIKN YWNTHIKRKL LARGMDPHTH RPLNAIAGAA MPAQQLRVAH 240 QHQYAAATPG GHHLQPQQQD PFAALSSSAE PACSHSSDDE PAGSATPPPP SRRHLGIDLN 300 LSISLAPYQP DDPAVKQEAA TTASHNNATT STSAACMCLN RLGFQGAGEG CRCGGASSVP 360 MQQQASTQHM FRFIAPLEGG RQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 108 | 210 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT054758 | 1e-166 | BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173633.1 | 0.0 | myb-related protein 330-like | ||||
Swissprot | P81395 | 1e-89 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A446R576 | 0.0 | A0A446R576_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_CC5803BED.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-88 | myb domain protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|