PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_C863DCEDC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 293aa MW: 32260.4 Da PI: 10.457 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 38 | 90 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 +++++gr++A+++d ++n k+ k+++lg + +e Aa+a++ a++k++g Traes_4AL_C863DCEDC.1 38 RHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 90 799***********888854566447*************************98 PP | |||||||
2 | AP2 | 53 | 8.6e-17 | 133 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Traes_4AL_C863DCEDC.1 133 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 184 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.28 | 18 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-8 | 37 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-13 | 37 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-13 | 38 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-18 | 38 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-23 | 133 | 194 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-18 | 133 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-12 | 133 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 134 | 192 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-18 | 134 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 134 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
GAGDKLVGGN AAAKRSSRFR GRIRDSVLRI NTAVYFCRHR WTGRFEAHLW DKGTWNPTQK 60 KKGKQVYLGA YNEEEAAARA YDLAALKYWG PTTYTNFPVV DYEKELKVMQ GVSREEYLAS 120 IRRKSNGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI 180 EYRGINAVTN FDLSTYIRWL KPGAAPAEAM SGLSGAPSPS STTTATTLIT PRDMGGLRLL 240 PPSRNSLSLL GDVGSTVFGG GPSPSPSPSS TTTALSLLLR SSVFQELVAQ QHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 64 | PTQKKKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition. {ECO:0000250, ECO:0000269|PubMed:12084821, ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106, ECO:0000269|PubMed:16553903, ECO:0000269|PubMed:16632590, ECO:0000269|PubMed:9733529}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiantly in leaves by sucrose, but not by abscisic acid (ABA). {ECO:0000269|PubMed:15753106}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF059989 | 7e-81 | EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171445.1 | 1e-164 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q6X5Y6 | 2e-86 | WRI1_ARATH; Ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | A0A453QN37 | 0.0 | A0A453QN37_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AL_C863DCEDC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4162 | 34 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 3e-79 | AP2 family protein |