PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_C5050FD87.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 145aa MW: 16755.4 Da PI: 9.832 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.9 | 5e-11 | 63 | 108 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + kkk k+ ++ + +tgCk k++vk+ dg+wev+ ++ eHnH+l+ Traes_4AL_C5050FD87.1 63 KLKKK-IKKLKRDKILQTGCKVKMVVKLI-DGRWEVIYFVAEHNHKLV 108 33333.6777889999*************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-8 | 65 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MNTSRKTVDT HVLVKQXFVX NKFQKPIENX GGAEKPPVLD IIVDRAXHVD EDDDIVFLGD 60 ESKLKKKIKK LKRDKILQTG CKVKMVVKLI DGRWEVIYFV AEHNHKLVEK PSLKKYLRSH 120 QGIPPEEKAF PTHLHNYNLT TGEND |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 69 | KLKKKIKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168640.1 | 4e-41 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020194049.1 | 2e-42 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2X0SC71 | 1e-63 | A0A2X0SC71_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AL_C5050FD87.1 | 3e-98 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Publications ? help Back to Top | |||
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