PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_C217A20A1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 741aa    MW: 82774.9 Da    PI: 6.0143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_C217A20A1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.74.3e-1173677402373
                   GRAS   2 velLlecAeavssgdle......laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                            +elL+ cA+av++++++        q ++ +l++++s  gdp+qRl ay++eAL ar+++s+++++kal++ +      ++ +++++l
  Traes_4AL_C217A20A1.2 367 KELLIVCAKAVADDKATniscssISQDIIVELRKMVSVCGDPLQRLGAYMLEALIARIFSSGHSVCKALESDA------EDFISYRNL 448
                            789*********988774445556799*********************************9999998776655......579****** PP

                   GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakf 168
                            ++e +P+lkf++l a  aI ea++ge+r+HiiDf+i  G+QW++LlqaLa R++g+p +RiTg++++ +     + +le +g+rL+++
  Traes_4AL_C217A20A1.2 449 LFESCPYLKFAYLSATGAIAEATNGEDRIHIIDFSICDGVQWVTLLQALARRAGGAPAVRITGIDDSVQAytlGRSKLELVGRRLSRI 536
                            ******************************************************************88779999************** PP

                   GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFle 255
                            A +++vpfef + va + ++l+  +L v +gE++aVn+ l lh++ d++ s+ s+rd++Lkl +slsP++v++ve+e+++ ++++F++
  Traes_4AL_C217A20A1.2 537 AGACNVPFEFCA-VAITASQLKAGHLGVIRGEVVAVNFNLGLHKISDDDESSLSQRDRILKLARSLSPRLVTLVEHELNTnEATTFAD 623
                            ************.7999***************************************************************45569*** PP

                   GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                            rf+e+l+yy+a+f+s++ +l r+++eri +E+++lg++ vn++acegaer+erhe +++W++rl +aGF+p pls+++++++k +l +
  Traes_4AL_C217A20A1.2 624 RFAETLDYYTAVFESVDLSLRRDANERIDMEQHCLGKDMVNLIACEGAERVERHELFGQWKARLIKAGFTPSPLSSHVNDTIKKMLLR 711
                            **************************************************************************************** PP

                   GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            ++ + yr ee++g l+lgWkdrpLv++SaW
  Traes_4AL_C217A20A1.2 712 YSCH-YRFEERDGVLYLGWKDRPLVVTSAW 740
                            **77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.204.7E-1635105No hitNo description
SuperFamilySSF561122.35E-5935318IPR011009Protein kinase-like domain
PROSITE profilePS5001134.01145313IPR000719Protein kinase domain
SMARTSM002204.0E-2445313IPR000719Protein kinase domain
PfamPF000697.4E-4547301IPR000719Protein kinase domain
PROSITE patternPS0010705174IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.108.1E-40106301No hitNo description
PROSITE profilePS5098560.329340722IPR005202Transcription factor GRAS
PfamPF035141.5E-114367740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MSNTKMADGD QHSEKIAALE KALLDESVDP IDLPFSLLKS ITGNFCEAQE IGRGGYGAVY  60
KGVLPSGRII AVKKLFERFE ILDKNFESEV ACLVGVKHKN TLRFLGYCSE TQLVVMPYDG  120
KLVCAEERQR LLCFEYICKG SIADYLSDAS YQLHWTAIIK GICEGVHYLH QQRIIRMDLK  180
PQNVLLDDNM VPRIADFGLS RRLSGSQSRV ITENKLGTMG YMAPEFLNRG EITFKTDVYS  240
LGVIIMEILM GHKECSNVEK VVESWTNKFG ASKNQTSLEQ VKVCAEIGIK CTNYDPGNRP  300
ATWFIVSEFE KMVEQETSRR SVTSDEAITE GQSTVRERVI TNTVLEESRL LTSYDIPTLS  360
AENLTMKELL IVCAKAVADD KATNISCSSI SQDIIVELRK MVSVCGDPLQ RLGAYMLEAL  420
IARIFSSGHS VCKALESDAE DFISYRNLLF ESCPYLKFAY LSATGAIAEA TNGEDRIHII  480
DFSICDGVQW VTLLQALARR AGGAPAVRIT GIDDSVQAYT LGRSKLELVG RRLSRIAGAC  540
NVPFEFCAVA ITASQLKAGH LGVIRGEVVA VNFNLGLHKI SDDDESSLSQ RDRILKLARS  600
LSPRLVTLVE HELNTNEATT FADRFAETLD YYTAVFESVD LSLRRDANER IDMEQHCLGK  660
DMVNLIACEG AERVERHELF GQWKARLIKA GFTPSPLSSH VNDTIKKMLL RYSCHYRFEE  720
RDGVLYLGWK DRPLVVTSAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-613707418375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562815.11e-166chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE11e-161CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6I2N60.0A0A3B6I2N6_WHEAT; Uncharacterized protein
STRINGTraes_4AL_C217A20A1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-125GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]