PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_BC54910D5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 401aa    MW: 42181.5 Da    PI: 8.5074
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_BC54910D5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-32118171458
            ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  Traes_4AL_BC54910D5.2 118 VKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 171
                            89*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-29118169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-30119169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-24119171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735120169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.79E-21272340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-31273342IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-27282338IPR006455Homeodomain, ZF-HD class
CDDcd000868.42E-4283336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVSIVQLQRR RTEASAAAAS ASARGILPDR EGRMDLSVPR GEFPIPMHQH AAASPYGGIG  60
GGGVAVADHA MELHHDHANH NGQSQAQDMP SPPAAASEDS SGKKRAAAIA GGAGGPPVKY  120
RECLKNHAAA IGGNATDGCG EFMPSGEEGS LEALKCSACG CHRNFHRKEL DDFDGDSCAS  180
HGYGYGYGHH AVRRLLGPAV PHHHKSSGGL LVTADHYGAY AAARALPPPP PPPLGHHHQI  240
IMPLNMIQTS ESDEMDGSGG IMGDGRGGLA SGGGGGGSSS SKKRFRTKFT AEQKGRMLEF  300
AENVGWRLQK LDDAMVQHFC QEIGVKRRVL KVWMHNNKHN LASRPPPTSP TPPQSQSMPL  360
AMSMPMPLGM SMPMQVPPSQ PGPSGHRGPS SPRAQGELKL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242813401675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615790.0AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.10.0zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N871e-104ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A3B6HVC30.0A0A3B6HVC3_WHEAT; Uncharacterized protein
TrEMBLA0A446R4Q00.0A0A446R4Q0_TRITD; Uncharacterized protein
STRINGTraes_4AL_BC54910D5.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-55homeobox protein 31
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]