PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_B6992AAA6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 270aa    MW: 28597.3 Da    PI: 6.885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_B6992AAA6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.5e-16166202135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nCg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Traes_4AL_B6992AAA6.1 166 CQNCGVSSrlTPAMRRGPAGPRTLCNACGLMWANKGT 202
                            **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0683368IPR010399Tify domain
SMARTSM009793.0E-83368IPR010399Tify domain
PfamPF062003.3E-113566IPR010399Tify domain
PROSITE profilePS5101713.35495137IPR010402CCT domain
PfamPF062031.1E-1595135IPR010402CCT domain
SMARTSM004019.4E-11160214IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-10164214No hitNo description
Gene3DG3DSA:3.30.50.104.6E-14165204IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.4E-14166202IPR000679Zinc finger, GATA-type
CDDcd002022.75E-15166212No hitNo description
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAAEPAADGQ DPPLADAAAA SGDDDAAAAN ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ  60
AALLVLGGCE VPPGLVSMAG PTAYGEKSTT VAAKRVASLM RFREKRKERC FDKKIRYGVR  120
KEVAQKMKRR KGQFAGRADF GDAASSSAAC VSAADGEDDH FRESHCQNCG VSSRLTPAMR  180
RGPAGPRTLC NACGLMWANK GTLRSPLNAP KMTVQHPANL SKMDSVDDDK AIVCAEPNHT  240
TVKMDSGMSP EQEQKPELRP ATEGDSMADS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187640.11e-164GATA transcription factor 19-like
SwissprotQ0DNU11e-140GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A3B6I0270.0A0A3B6I027_WHEAT; Uncharacterized protein
TrEMBLA0A446R6T60.0A0A446R6T6_TRITD; Uncharacterized protein
STRINGTraes_4AL_B6992AAA6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-52ZIM-LIKE 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]