PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_B2CACD56E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 501aa    MW: 54635.6 Da    PI: 9.8133
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_B2CACD56E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS136.43.1e-423615012145
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lLl+cA+a+s+++ + a +lL+r+++++sp+gd+ qRla+yf+++L+arla+ +sely++l  s+ s   +++ l+a +l+  ++ 
  Traes_4AL_B2CACD56E.1 361 HTLLLNCAQALSTDNRQSAIELLKRIRQHSSPKGDAGQRLAHYFANGLEARLAGRGSELYQSLLLSRIS---VADFLKANQLYMAACC 445
                            679************************************************************999998...**************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145
                            + k++++ a ++I +av+g++r+Hi+D++++qGlQWp Ll+ La+R++gpp++RiT
  Traes_4AL_B2CACD56E.1 446 CKKVAYIFADKTICNAVAGKRRLHIVDYGLNQGLQWPGLLRMLAAREGGPPEVRIT 501
                            *******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.5334501IPR005202Transcription factor GRAS
PfamPF035141.1E-39361501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIPGNAGTVN AHHIRTLLCL LGLGWCTCTA LHGPASFILL SSISHLTGSF LEPSLLHGHA  60
SIPSHPARSA MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRDDDGHS SFDDMVLPYI  120
SRLLMEEGTE DHLFXXXXXX RSSPSRRSSS TSPTAPAPAA PPPRPPPLPT QLPPPPPAPQ  180
LLRHRHRHRP TTHQSRSHGR PTPTSTAMPP PPRTITAQGS STATRWPKGR ALTCSITCCP  240
ATRTCSTWPS SKAWRRLASS CRPTSPXXXX XXVGGGNAVS LNNKKRAALA LEPDVGRPSK  300
LMMPEQEERK MFDEMMFQEH EICMKGTQNL TAAVDGEPGK NSRKNGRSRK AVDDSEMVDL  360
HTLLLNCAQA LSTDNRQSAI ELLKRIRQHS SPKGDAGQRL AHYFANGLEA RLAGRGSELY  420
QSLLLSRISV ADFLKANQLY MAACCCKKVA YIFADKTICN AVAGKRRLHI VDYGLNQGLQ  480
WPGLLRMLAA REGGPPEVRI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2036650125163Protein SCARECROW
5b3h_A8e-2036650124162Protein SCARECROW
5b3h_D8e-2036650124162Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672260.0AK367226.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2053C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172168.11e-149scarecrow-like protein 34
TrEMBLA0A446R0C41e-158A0A446R0C4_TRITD; Uncharacterized protein
TrEMBLM7ZQI41e-157M7ZQI4_TRIUA; Uncharacterized protein
STRINGTraes_4AL_B2CACD56E.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-45SCARECROW-like 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]