PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_A5BC0BDBA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 354aa    MW: 38393.2 Da    PI: 6.3798
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_A5BC0BDBA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092883202254
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            ++yps +e+ +LA ++gL+ rq+++WF N R +
  Traes_4AL_A5BC0BDBA.2 288 DPYPSDNEKLRLAVSTGLSRRQISNWFINARVR 320
                            89*****************************88 PP
2BELL52.89.8e-18143206972
                   BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            +akLl ll e++ r ++y ++l  v+ssFe + g  + + Ytsl ++a++rhF +L+ ai  ++
  Traes_4AL_A5BC0BDBA.2 143 QAKLLGLLSELEGRQEHYFQELSRVASSFEPALGPAATAGYTSLMSRAMTRHFANLRRAILRKL 206
                            69**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-666204IPR006563POX domain
PfamPF075261.6E-2271202IPR006563POX domain
SMARTSM003895.8E-9264328IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-24269330IPR009057Homeodomain-like
SuperFamilySSF466893.64E-17271333IPR009057Homeodomain-like
CDDcd000862.10E-11275325No hitNo description
PfamPF059203.8E-17281320IPR008422Homeobox KN domain
PROSITE profilePS5007111.872283324IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVTKRLQESG SPKQARPVAT DSANGPLMLL RLREQCCREH HPAASPAGPL ALTLGAPAAK  60
TDDVCRCCCS VLSGSRYLRP VQELLRDAVS AVVVGGDDDE SAGGGSEDDA PGEEALREIR  120
LRAAATRRRG IQAKNDGGAG AVQAKLLGLL SELEGRQEHY FQELSRVASS FEPALGPAAT  180
AGYTSLMSRA MTRHFANLRR AILRKLAAVA RPAPAPRARL WTNDDSEEEE DDDEYDPAQT  240
EDMVSRLVRR TKQAVAARAA EQVCKPLRGL PEGSVAVLRA WLFNHFIDPY PSDNEKLRLA  300
VSTGLSRRQI SNWFINARVR LWKPMIEEMY ADEFSDVSSR DDDAGGGGAA ASSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16270328563Homeobox protein Meis2
4xrm_B9e-16270328563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733880.0AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.10.0BEL1-like homeodomain protein 3
TrEMBLA0A446RAG00.0A0A446RAG0_TRITD; Uncharacterized protein
STRINGTraes_4AL_A5BC0BDBA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-47BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]