PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_9A089DC10.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 327aa MW: 38595.2 Da PI: 8.7789 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.8 | 5.7e-26 | 20 | 114 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn+YA + GFsvrk + + + n++i+ r++vCs+eg ree++ k ++++r++r+ tr+gCkak+++ + +g+w v+++ e Traes_4AL_9A089DC10.1 20 EFYNKYALQKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGRWFVKDFIDE 107 6*****************************************99988777889999***************99988************ PP FAR1 85 HnHelap 91 HnH+lap Traes_4AL_9A089DC10.1 108 HNHPLAP 114 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-24 | 20 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-35 | 235 | 326 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAEYDCIVSR MFDSEEEGFE FYNKYALQKG FSVRKGYVEW DEANEKIILR KLVCSREGCR 60 EEKHMKRKRE DRKRKPRNIT RVGCKAKFVI ARVAKTGRWF VKDFIDEHNH PLAPRDLSCF 120 LRSHRRISDE KKADIIEMES VGIKKHKIMD VLCMQYGGYD HVGCTTRDIY NFCHRYKQET 180 VAAGDAQAVI RHMMARQERD PDYFFKYLVD KAGHLKGLFW SDTQSRLDYE AFGDVVVFDS 240 TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT 300 DGDLAMQRAI RVVWPDSYHR LCVWHIQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | KREDRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150064.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020179994.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A452ZGZ6 | 0.0 | A0A452ZGZ6_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453K0L1 | 0.0 | A0A453K0L1_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453K0N5 | 0.0 | A0A453K0N5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PYR9 | 0.0 | A0A453PYR9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AL_9A089DC10.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-69 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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