PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_977AF4963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 64aa MW: 7649.75 Da PI: 10.2261 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 25.7 | 1.3e-08 | 5 | 58 | 320 | 373 |
GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aG++++pl+ +++ + ++ + + + v+e++ +l+ Wk+r L+++S W Traes_4AL_977AF4963.1 5 HRAGLRQLPLNPDVVRLVLDKVKDNYHKDFVVDEDQRWLLHRWKGRVLYALSTW 58 689*******************9999888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.5E-6 | 5 | 58 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
QLRNHRAGLR QLPLNPDVVR LVLDKVKDNY HKDFVVDEDQ RWLLHRWKGR VLYALSTWVA 60 DNAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363346 | 6e-93 | AK363346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014K12. | |||
GenBank | AK366442 | 6e-93 | AK366442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172169.1 | 2e-39 | scarecrow-like protein 33 | ||||
Refseq | XP_020172170.1 | 2e-39 | scarecrow-like protein 33 | ||||
Swissprot | O80933 | 3e-16 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | R7W5Z4 | 2e-38 | R7W5Z4_AEGTA; Uncharacterized protein | ||||
STRING | EMT03071 | 3e-39 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37422 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-15 | GRAS family protein |