PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_8B3A3CC2F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 729aa MW: 82101.5 Da PI: 6.4632 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.1 | 1.2e-22 | 107 | 193 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk k+++ + +++i ++++ Cskeg +e ek + +e+ + ++trt+C+a+++ + +++g+w+v++l+++HnH+l Traes_4AL_8B3A3CC2F.2 107 LYCDYGHRTGFSVRKGKQSYFTGTKRIRTKDYFCSKEGLKEAEKLT--DENFNDPHTRTNCRAMVRFRANSQGEWRVIRLVSDHNHNL 192 7*****************************************9988..9999***********************************9 PP FAR1 90 a 90 + Traes_4AL_8B3A3CC2F.2 193 V 193 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-20 | 107 | 193 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-28 | 317 | 411 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 600 | 636 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0036 | 611 | 638 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MVNTDGEGAD AVGGDPMCVD ESAAVVAGMG ADQCEGARLQ DSGAAVSIEG AREGEVPVSH 60 PGGGMRVRGA TVEEAENEEA PTVQGSKEGA EELLLKVVYS EEEAYKLYCD YGHRTGFSVR 120 KGKQSYFTGT KRIRTKDYFC SKEGLKEAEK LTDENFNDPH TRTNCRAMVR FRANSQGEWR 180 VIRLVSDHNH NLVRPEERHL LRSAKSLIAG RSCSAADAVL YGGYQLGGAP SQMAASTSVA 240 NNAETQRQDL LPGFSGITRT SAVGTGELQS IVSHLKSRAN VDGMFYWDVH LDRAGRMSNF 300 FWRDGRSRMD YDCFGDVVVF DSTYRLNKQN YIVAPFVGVN HHWQTTMYGC ALLADDSMAS 360 FTWLFKSFLE AMGNRQPRSI FTNQDQVMSN AIEEVFPNTC HRIAHWHIQK NAASRLGALN 420 ASKAFNKMFT KCMQGCDSEA EFEGTWAAML REFKLQDNKW LSKLYKLKQK WCGALNKCTF 480 DGGVENEPQC DSLSNIFTCI VDKSTSLSTM VAAVDKLTED WREKEFDEDV RCCQRPLSCI 540 IKHSDILNHA AKVYTHRIYK LFETYFLDGC GATKFKALPC EDSDTYRFEM TMQGRGSRVC 600 TVHLNMSTMQ LTCSCSQFET MGLLCPHTLK ALSIKNVGKI PEIYILKRWT RDAKQWVFNP 660 KQYESSFQEC MDDEAGYCNH AMRYAYDLVM KSEGQEELRR SLWQALESGE KELEKYLENA 720 TQYPQSYAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182740.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
Refseq | XP_020182741.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
TrEMBL | A0A453QFB7 | 0.0 | A0A453QFB7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AL_8B3A3CC2F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-85 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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