PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_822582A19.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 266aa    MW: 28237.9 Da    PI: 9.3879
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_822582A19.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1989143256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Traes_4AL_822582A19.1  89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLGLRPRQVEVWFQNRRARTK 143
                            788899***********************************************98 PP
2HD-ZIP_I/II123.51e-3989179192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l+e+n+rLekev+eLr
  Traes_4AL_822582A19.1  89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQLAEQNRRLEKEVAELR 176
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eelk 92 
                             +lk
  Traes_4AL_822582A19.1 177 -ALK 179
                            .565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1960146IPR009057Homeodomain-like
SuperFamilySSF466891.07E-1877146IPR009057Homeodomain-like
PROSITE profilePS5007116.77985145IPR001356Homeobox domain
SMARTSM003896.1E-1787149IPR001356Homeobox domain
PfamPF000466.3E-1789143IPR001356Homeobox domain
CDDcd000866.82E-1689146No hitNo description
PRINTSPR000313.5E-5116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5125141IPR000047Helix-turn-helix motif
SMARTSM003401.2E-20145188IPR003106Leucine zipper, homeobox-associated
PfamPF021835.6E-10145179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLVSRP SQPSFWYSGG NVAADQEVGP TPTAAAVEER RCSPGSPASS  60
GSGSGLKRGA ERSAGSGDED QDDDGGNARK KLRLSKDQAA VLEECFKTHH TLTPKQKLAL  120
ANSLGLRPRQ VEVWFQNRRA RTKLKQTEVD CEYMKRWCEQ LAEQNRRLEK EVAELRALKA  180
APPAHNGAAA GPLTTLTMCL SCKRVASTSS ASACTVPSFS ANAGIGMPMP SPVAQPEHRQ  240
FFCGFRDTGA AYGGPAGLTK VVKAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669970.0AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170044.11e-140homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-64HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-64HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A3B6I0H20.0A0A3B6I0H2_WHEAT; Uncharacterized protein
TrEMBLA0A446RHU20.0A0A446RHU2_TRITD; Uncharacterized protein
STRINGTraes_4AL_822582A19.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-47homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]