PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_7DCBCAF88.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 34aa MW: 3740.24 Da PI: 4.7726 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.3e-08 | 15 | 34 | 1 | 20 |
TSSS-HHHHHHHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlG 20 +g+WTteEd+llv+++++ G Traes_4AL_7DCBCAF88.1 15 KGPWTTEEDKLLVNYIQEKG 34 79**************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.275 | 10 | 34 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-5 | 11 | 34 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-7 | 13 | 34 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 34 aa Download sequence Send to blast |
MGRSPCCDGE AGVKKGPWTT EEDKLLVNYI QEKG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162283.1 | 2e-15 | transcription factor MYB39-like | ||||
TrEMBL | A0A3B6I2G9 | 2e-15 | A0A3B6I2G9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RKW1 | 3e-15 | A0A446RKW1_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_7DCBCAF88.1 | 2e-17 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 5e-13 | myb domain protein 93 |
Publications ? help Back to Top | |||
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