PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_76355F5F2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 575aa    MW: 61412.4 Da    PI: 4.5231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_76355F5F2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019443468123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++C   +C+++F+ + +L +H ++ +
  Traes_4AL_76355F5F2.1 443 FECDidYCHMTFKKRAELSVHKKNmC 468
                            89*******************99866 PP
2zf-C2H213.20.00026468490323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   Cgk+F+++ +L+rH++ H
  Traes_4AL_76355F5F2.1 468 CTikSCGKHFRSHKYLRRHQSIH 490
                            77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529443465IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.487466495IPR007087Zinc finger, C2H2
SMARTSM003550.46466490IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-6467490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280468490IPR007087Zinc finger, C2H2
SuperFamilySSF576676.93E-11482524No hitNo description
Gene3DG3DSA:3.30.160.601.9E-12491518IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.214496525IPR007087Zinc finger, C2H2
SMARTSM003550.0012496520IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280498520IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8512549No hitNo description
Gene3DG3DSA:3.30.160.605.3E-10519547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540526548IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGASPVDESA SEAATEAADL VTTPGAPLDN QGVAEPDIKM GASPVNECAA KTATEAADVV  60
AALRVTTVAS FDNKGVAEPD TKMEASPANE SAAEMDFLHS GSLVTEAATH PGLPERVSLA  120
NGAATEREVS EAGSLVSEPA AEAADVVTAL EVTTGAPLDN EGTAEPEIKI GPSFANEYTA  180
EMDSVLLGSL VTEATTHPGL IGRVSLVTET GVTGGANLDT EVSIEPEDTG RPSLVNESTE  240
LEITRGVSIA TDAASEPEVT GQASACSGDS DAALNEPETL DCDLDSANVQ IENAGESVAT  300
KVQPSRDDRG DVCSVNAMST CPVTDKSLAF DEVIPQDDAP SVSCASGVVV RSVGQSERTD  360
VICYARRRGK RKLDMEETKT DQLEMGDGDI YGQCEEKATF DITVPCESTM SNAESADIKL  420
ADIKRGLVDN SASSKGKKRK GRFECDIDYC HMTFKKRAEL SVHKKNMCTI KSCGKHFRSH  480
KYLRRHQSIH NEETPYKCPW EGCSMAFKWT WALADHFQVH TGEKPYKCRT PGCSKIYKYV  540
SDFTRHRMRC KPQRESLVSS CYVPVLFVGP TLRVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-4044354923129Lysine-specific demethylase REF6
6a58_A5e-4044354923129Lysine-specific demethylase REF6
6a59_A5e-4044354923129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365371RRRGKRK
2365372RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197869.10.0uncharacterized protein LOC109783681 isoform X2
TrEMBLA0A446RFU80.0A0A446RFU8_TRITD; Uncharacterized protein
STRINGTraes_4AL_76355F5F2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.18e-40C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]