PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_75D069945.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 352aa MW: 37935.4 Da PI: 7.6599

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_75D069945.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	155.6	2.8e-48	105	259	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai e + + +++s+c e++sss s+ ++ Traes_4AL_75D069945.1 105 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKGAIREVMTD--EASSDCeEDGSSSLSVVDGKH 190 589************************************************************..666679766666666553333 PP TCP 88 g....................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + +a+++ a++k+++k a+++ ++kesr kar+rarertrek+r+++++ Traes_4AL_75D069945.1 191 KppgteagggdhgegkkpmprAARRAPANPKPQRKLASAHPIPDKESRTKARERARERTREKNRMRWVT 259 357888889999999995555555599999999999999999********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-44	107	255	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.527	108	166	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.733	235	252	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADAFHH SYLCAGAATP 60 PAAEIDNQPP PELLLMDQAP APRADGVGTA QGLHGGGGLD SAAAAAARKD RHSKICTAGG 120 MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNTSK GAIREVMTDE ASSDCEEDGS 180 SSLSVVDGKH KPPGTEAGGG DHGEGKKPMP RAARRAPANP KPQRKLASAH PIPDKESRTK 240 ARERARERTR EKNRMRWVTL ASTINIEPAA TGMAAARADE LITRPHNFIN RSSSMNTASA 300 ELEEGCSSSM PSEAIVAGFG NGGYGSSGNY YQYQLEQQWE LAGVVFPNSQ PY

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADAFHH SYLCAGAATP  60
PAAEIDNQPP PELLLMDQAP APRADGVGTA QGLHGGGGLD SAAAAAARKD RHSKICTAGG  120
MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNTSK GAIREVMTDE ASSDCEEDGS  180
SSLSVVDGKH KPPGTEAGGG DHGEGKKPMP RAARRAPANP KPQRKLASAH PIPDKESRTK  240
ARERARERTR EKNRMRWVTL ASTINIEPAA TGMAAARADE LITRPHNFIN RSSSMNTASA  300
ELEEGCSSSM PSEAIVAGFG NGGYGSSGNY YQYQLEQQWE LAGVVFPNSQ PY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF543437	0.0	AF543437.1 Leymus cinereus chromosome 4 TCP1 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185348.1	0.0	transcription factor TEOSINTE BRANCHED 1-like
Swissprot	Q8LN68	1e-112	TB1_ORYSJ; Transcription factor TB1
TrEMBL	A0A3B6I0T6	0.0	A0A3B6I0T6_WHEAT; Uncharacterized protein
TrEMBL	A0A446R8R6	0.0	A0A446R8R6_TRITD; Uncharacterized protein
STRING	Traes_4AL_75D069945.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-24	TCP domain protein 12

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]