PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_72A03AD23.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8594.92 Da    PI: 10.1914
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_72A03AD23.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.6e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ++ien++ rqvtfskR+ g++KK +EL vLCda+v + ifs+tg+lyeys+
  Traes_4AL_72A03AD23.1  9 EKIENQTSRQVTFSKRKSGLFKKGKELGVLCDAQVGIFIFSNTGRLYEYSN 59
                           58***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.796161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-25364IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-25323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MVRGKAVIEK IENQTSRQVT FSKRKSGLFK KGKELGVLCD AQVGIFIFSN TGRLYEYSNS  60
GYVHISAFSC SRIWID
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165070.13e-29MADS-box transcription factor 23-like
SwissprotQ6EP492e-24MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A452XQ431e-30A0A452XQ43_AEGTS; Uncharacterized protein
STRINGTraes_4AL_72A03AD23.13e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-27AGAMOUS-like 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]