PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_7241716B6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 24025.2 Da PI: 7.5657 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.1 | 7.4e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++ Traes_4AL_7241716B6.1 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTS 89 6*********************9999888899******************************************************** PP DUF260 84 qqqleqlkaelallke 99 +++l+q++ae++l+++ Traes_4AL_7241716B6.1 90 NWDLCQAAAEAVLRGD 105 **********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.795 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAAEA VLRGDSLRSL SAVPAAFTER 120 DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNSPG CGAVGGQQQV KLPGPGPVLQ 180 SCELDLCLTP LSSPLAGGRR GGASDEYSTT TCCEEASGDA AEAGAPPLLN LFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366686 | 0.0 | AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177395.1 | 1e-153 | LOB domain-containing protein 39-like | ||||
TrEMBL | A0A446R696 | 1e-168 | A0A446R696_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_7241716B6.1 | 1e-168 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-55 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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