PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_6A6EC9A6A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33935.4 Da PI: 4.4152 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 4.1e-11 | 239 | 279 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+AveY+k Lq Traes_4AL_6A6EC9A6A.2 239 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 279 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-15 | 229 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.332 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 234 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-12 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.78E-13 | 238 | 283 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 239 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MESGGVITEA GWDSLGLTSQ AEESEMMEQL LGTFPSNGEE EHQELPWSVQ ATHAYYAHCN 60 GSSNAYSSAS SNSVGSLVLD MPSDYGGFYL GDSNGIGSCT AALDLNMVQE QGAAQFMDAI 120 FNPSYGNGDS SCDDLGDSSM NLLDSIDTSN KRKCQDQGKI ADQTSGRKYS RKADSKRTKK 180 AMQCEGDDGT TTDTNKQSLS CCTSEIDSNA SQEPPVASKP KSKAQAGRQT TDPQSLYARK 240 RREKINERLK VLQNLVPNGT KVDISTMLEE AVEYVKFLQL QIKLLSSDEM WMYAPIAYNG 300 MNIGIDLNLS QH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 243 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188753.1 | 0.0 | transcription factor bHLH54-like | ||||
Swissprot | Q7XHI9 | 5e-45 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A3B6HX63 | 0.0 | A0A3B6HX63_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R5X6 | 0.0 | A0A446R5X6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_6A6EC9A6A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 5e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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