PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_69EEFB3DA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 150aa MW: 15619.3 Da PI: 9.2475 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2.1e-08 | 111 | 149 | 2 | 40 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 rk+ +++k+q +Lee+F+++++++ ++++ LA++lgL Traes_4AL_69EEFB3DA.1 111 RKKLRLSKDQAAVLEECFKMHSTLNPKQKTALANRLGLR 149 678899*******************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.15E-6 | 97 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 99 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.8E-6 | 111 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-5 | 111 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MHHAAGLDLG LGLGLGLASQ GSLTSSTTTA SSSPASQAHA QHWTAAFSSV VGAQEYERQQ 60 LLHRKEEPGM RPSTSPESGV SAGTKRGLER TGSGVSPATG SDEDDDGAGG RKKLRLSKDQ 120 AAVLEECFKM HSTLNPKQKT ALANRLGLRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365238 | 3e-81 | AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170043.1 | 9e-52 | homeobox-leucine zipper protein HOX2-like | ||||
TrEMBL | A0A446RI88 | 1e-102 | A0A446RI88_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_69EEFB3DA.1 | 1e-104 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 6e-18 | homeobox protein 2 |
Publications ? help Back to Top | |||
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