PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_61B6D8837.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 858aa    MW: 92944.3 Da    PI: 6.3601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_61B6D8837.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000716627001355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  Traes_4AL_61B6D8837.1 662 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 700
                            67799************66.....66888899******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.6E-194132IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.0031643700No hitNo description
PROSITE profilePS5088810.588649699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-5662712IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-5662705IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MCRHLVWEDG YCGHTPCPAG SEASQARAAE LGCSAAVDSI CSLVRKDMAE QVHVVGEGTI  60
GRVAFTGSHQ WIIHGTADDH GLSSEVASEM HYQFRAGIKT IAIIPVLPRG VLQLGSTGVV  120
VENTSFVMHA KKLCSQLNQR SSMAASASVK STSNQSRPLH GASNIQAADN SFSQFPVMRE  180
QYRRSDSATA SSSKSLNASL FEAAQQNGLT GREHIVYGKP NDMFLQQASY CDSRLGSNTL  240
SAAISSDLVP SSLASVEQQQ MLMNTIGQLE FGSGADLARS ALLKSLLYRN PFMHETSDMK  300
LSHGRVGLSQ GTTGHGSYGF LPGSAGVVST TLCTSSQVSE QGSHSSSGML RQKQPPVSCN  360
VPQSSEFTMK MVRQERSSES ALPVSSQSDA QVSNCLNGIS QENLLSRSGH MQKDQNANRA  420
NDTRVAVSTQ GVKNVDGCML PAMPSETAHS LLLQPTWDND LFDIFGSEFH QLGHNVDANL  480
VSSCDAKSHS LDRDAAEPSI CLDSSSLFSS LDNDFPCSGI FSLTDTDQLL DAVISNVNPS  540
SKQSSDDNAS CKTALTDIPN ISHFGLEELK QCDSSGIPST VIKNESTQIV RQPYYFDKTE  600
DGCLSQNNGA QKSQIRLWIE NGQNMKCESA SASNSKGLDT QSKSNRKRSR PGESSKARPK  660
DRQLIQDRIK ELREMVPNGA KQCSIDALLE KTVKHMLFLQ SVTKHADKLK DSTESKILGS  720
ENGPVWKDYF EGGATWAFDV GSQSMTCPII VEDLDRPRQM LVEMICEDRG IFLEIADFIK  780
GLGLTILRGV MEARKSKIWA RFTVEANRDV TRMEIFLSLV RLLEPNCDGS GAVENPNSVN  840
MPLGLVRQPV IPATGGIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178282.10.0transcription factor LHW-like isoform X1
TrEMBLA0A3B6HYG00.0A0A3B6HYG0_WHEAT; Uncharacterized protein
TrEMBLA0A446R2210.0A0A446R221_TRITD; Uncharacterized protein
STRINGTraes_4AL_61B6D8837.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-51conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]