PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_4F2E6EF28.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 279aa MW: 31175.7 Da PI: 7.4531 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.6 | 6.7e-30 | 37 | 140 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pk++ae++ g + e++ l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ Traes_4AL_4F2E6EF28.1 37 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLEAGDVVHFER 124 99***************************9555668889************************************************8 PP -SS..SEE..EEEEE- CS B3 85 dgr..sefelvvkvfr 98 ++ ++ +l+++ +r Traes_4AL_4F2E6EF28.1 125 VRGlgTGDRLFIGCRR 140 8655455556666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 32 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-28 | 34 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.41E-27 | 35 | 127 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 37 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-27 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE 60 RCFPLGGDSG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLEAGDVV 120 HFERVRGLGT GDRLFIGCRR RGDVSAPTAV APPPAVHVVP ASGQSPREQQ QHQQPWSPMC 180 YSTSTSYPTS PATSHAYRRS AEHDHSDMHH AGESQWDADT RSCSPASAPT RRLRLFGVNL 240 DCAPEPEAEA VPATPAMYGY VHQSPYAAVS PVPSNWGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-50 | 32 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-50 | 32 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375277 | 0.0 | AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174894.1 | 0.0 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-126 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A3B6HYC9 | 0.0 | A0A3B6HYC9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R2C4 | 0.0 | A0A446R2C4_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_4F2E6EF28.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 1e-52 | B3 family protein |
Publications ? help Back to Top | |||
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