PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_4954CD38D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 607aa MW: 63953.3 Da PI: 7.3412 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 9.5e-24 | 212 | 255 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Traes_4AL_4954CD38D.1 212 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255 69***************************************986 PP | |||||||
2 | QLQ | 58.8 | 1.6e-20 | 145 | 181 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP+ Ll++i++ Traes_4AL_4954CD38D.1 145 GPFTPSQWMELEHQALIYKYLAANIAVPHSLLVPIRR 181 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-12 | 145 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-14 | 146 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.879 | 146 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 211 | 255 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.1E-20 | 213 | 254 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MDLGGVLMAA ADAGVGGGEL GMLGSRLLKH GRGNAAAAEA DERHEHGWGG GRPAAKQARV 60 AGDSDAVSEA VKAAAPYLLG TCSPGHGREK MLSFSSSQQP PSCPSAAAAA QAALPLYYGT 120 PASCLGLSSV SLSASIQGAM ARVRGPFTPS QWMELEHQAL IYKYLAANIA VPHSLLVPIR 180 RSVTSLYPSA YFGSSTLGWG PFQLGYSGSA DLEPGRCRRT DGKKWRCSRD AVADQKYCER 240 HMNRGRHRSR KHVEGQPGHA AKAMPATVAA AAAQPGALAT GGGGGATAGA AICHEQQPLK 300 SYSASTIDPC SLQYNREMAS KQQHECEQVQ DSDTLSMLTS MSARNTNTGS MFPFSKEHHN 360 HNPFEVTSSR PDYGLVSSDS LMSSPHSSLE NVNLLTSQRA LSSEQQSSLS LQHFADWPRT 420 PSQQGQGGGG LSWPDAENMQ LAHQRTQQLS VSAAPMASSD LSSASTSPIH EKLMLSPLKL 480 SREYSPIGLS VAATAAAAAK DEGEANWMPM FRDSSMGGPL GEALNKNNGG NMEAKNYLSA 540 SLNLMTDAWD SSPLESSPVG VLQRTAFGSV SSSTGSSPRQ EYHGVYDGNP RDDLGSIVVN 600 HPSIRLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376067 | 0.0 | AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187288.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A446R7C6 | 0.0 | A0A446R7C6_TRITD; Uncharacterized protein | ||||
TrEMBL | W5DNQ4 | 0.0 | W5DNQ4_WHEAT; Growth regulating factor 6-A1 | ||||
STRING | Traes_4AL_4954CD38D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 7e-48 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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