PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_4954CD38D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 607aa    MW: 63953.3 Da    PI: 7.3412
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_4954CD38D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.89.5e-24212255245
                    WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                             epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Traes_4AL_4954CD38D.1 212 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255
                            69***************************************986 PP

2QLQ58.81.6e-20145181137
                    QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            ++FT++Q+++L++Q+l+yKyLaan  vP+ Ll++i++
  Traes_4AL_4954CD38D.1 145 GPFTPSQWMELEHQALIYKYLAANIAVPHSLLVPIRR 181
                            59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-12145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-14146180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.879146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65211255IPR014977WRC domain
PfamPF088795.1E-20213254IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDLGGVLMAA ADAGVGGGEL GMLGSRLLKH GRGNAAAAEA DERHEHGWGG GRPAAKQARV  60
AGDSDAVSEA VKAAAPYLLG TCSPGHGREK MLSFSSSQQP PSCPSAAAAA QAALPLYYGT  120
PASCLGLSSV SLSASIQGAM ARVRGPFTPS QWMELEHQAL IYKYLAANIA VPHSLLVPIR  180
RSVTSLYPSA YFGSSTLGWG PFQLGYSGSA DLEPGRCRRT DGKKWRCSRD AVADQKYCER  240
HMNRGRHRSR KHVEGQPGHA AKAMPATVAA AAAQPGALAT GGGGGATAGA AICHEQQPLK  300
SYSASTIDPC SLQYNREMAS KQQHECEQVQ DSDTLSMLTS MSARNTNTGS MFPFSKEHHN  360
HNPFEVTSSR PDYGLVSSDS LMSSPHSSLE NVNLLTSQRA LSSEQQSSLS LQHFADWPRT  420
PSQQGQGGGG LSWPDAENMQ LAHQRTQQLS VSAAPMASSD LSSASTSPIH EKLMLSPLKL  480
SREYSPIGLS VAATAAAAAK DEGEANWMPM FRDSSMGGPL GEALNKNNGG NMEAKNYLSA  540
SLNLMTDAWD SSPLESSPVG VLQRTAFGSV SSSTGSSPRQ EYHGVYDGNP RDDLGSIVVN  600
HPSIRLM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3760670.0AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187288.10.0growth-regulating factor 6-like
SwissprotQ6AWY30.0GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A446R7C60.0A0A446R7C6_TRITD; Uncharacterized protein
TrEMBLW5DNQ40.0W5DNQ4_WHEAT; Growth regulating factor 6-A1
STRINGTraes_4AL_4954CD38D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.17e-48growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  4. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]