PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_445A910EB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 217aa MW: 23499.2 Da PI: 11.6735 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.5 | 3.5e-25 | 42 | 148 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---...--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.esktltledesg..rsWevkliyrkksgryvltkGWkeFvkangL 74 f+kv tpsdv+k++rlv+pk+fae+h + + l++ed +g + W ++++y+++s++yv+tkGW+ Fv++ +L Traes_4AL_445A910EB.2 42 FDKVVTPSDVGKLNRLVVPKQFAERHilprllggaarA---AcPGAVLRFEDGRGggKAWAFRFSYWGSSQSYVMTKGWSAFVRDRRL 126 89*****************************9875431...2234579999977788******************************* PP -TT-EEEEEE-SSSEE..EEEEE-S CS B3 75 kegDfvvFkldgrsefelvvkvfrk 99 +gD+v F r +++l++ +r+ Traes_4AL_445A910EB.2 127 AAGDTVSFC---RAGARLFIDCRRR 148 ********9...4567778877775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-32 | 35 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-24 | 39 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.54E-24 | 40 | 134 | No hit | No description |
SMART | SM01019 | 1.6E-14 | 42 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-22 | 42 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 42 | 149 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MALTAAWESR GAAQEGGGGG VELARSGKGS NGEERIRREH MFDKVVTPSD VGKLNRLVVP 60 KQFAERHILP RLLGGAARAA CPGAVLRFED GRGGGKAWAF RFSYWGSSQS YVMTKGWSAF 120 VRDRRLAAGD TVSFCRAGAR LFIDCRRRGA GIVASAPVTR LLVPAVVPRV VTLMPQRSTP 180 SDERAPRGRC VRLFGVDLEL AGAQPLPLDL QLALMRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-39 | 38 | 148 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-39 | 38 | 148 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179500.1 | 1e-139 | B3 domain-containing protein Os06g0107800-like | ||||
Swissprot | Q5VS55 | 2e-54 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A3B6I4T6 | 1e-152 | A0A3B6I4T6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AL_445A910EB.2 | 1e-153 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 3e-36 | B3 family protein |
Publications ? help Back to Top | |||
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