PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_405CA738F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 361aa    MW: 37928.8 Da    PI: 6.8698
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_405CA738F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.3e-0965982154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           ++ryp+ +++  LAk++gLt +qV++WF N R +
  Traes_4AL_405CA738F.1 65 SCRYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 98
                           589*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.6E-748106IPR001356Homeobox domain
SuperFamilySSF466897.27E-1361109IPR009057Homeodomain-like
CDDcd000868.61E-1166103No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1867108IPR009057Homeodomain-like
PROSITE profilePS5007110.72267102IPR001356Homeobox domain
PfamPF059206.0E-136898IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRDIDIARDT RHTHNAHDAF CMQTCTHGTS IRTCVRTCAP KTGGYVRTRR PRVALPLVDR  60
IALSSCRYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE ETKEHQQQQD  120
GGDDKGRPSG SGPAGGKSSS NADGVDDGTP RSMARAAAGA GTSEGGGTVQ ASLLELAGDH  180
QAHAGFYDEE GEDGGLRRGF KKARAAGLEQ QPPAAFDFGA LHHAQAAAAA AAAAARQQHD  240
EVSHRELLMK FMESGGAAGA RDHHHHQQDE DGAGGGYSLF APGPYGQFGA DQSFAFAGAG  300
QHGGVSLTLG LPHGAGDQTA FLMGGGSSNG ADSGGSGAAG YDMNMQTTKS FAAQLMRDFV  360
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546390.0AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550780.0AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3569800.0AK356980.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1043H24.
GenBankAK3665360.0AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743450.0AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178285.10.0BEL1-like homeodomain protein 1
RefseqXP_020178286.10.0BEL1-like homeodomain protein 1
TrEMBLA0A446R2610.0A0A446R261_TRITD; Uncharacterized protein
STRINGTraes_4AL_405CA738F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.14e-22BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]