PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_37D98E743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 45773.7 Da PI: 9.0947 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 194 | 216 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+dC++ F ++L+ H t H Traes_4AL_37D98E743.1 194 PCSDCDEFFVKAESLELHRATrH 216 6******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 195 | 216 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 5.28E-15 | 218 | 429 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.7E-11 | 223 | 429 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDATAAGKKM GIGGEKKQQR KPGSSFWGAM ALKSRSQPGG AGESKNIKSE RKTTTTTTKR 60 SVSIGRSMTC PGSICGTKES AVLSRESCRN SHSGRNVSSS SRSLKAPDND ILSVPVVASG 120 AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSAL 180 DPRTSLVGGA GMLPCSDCDE FFVKAESLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL 240 VGKPRAAPIC RIERILKVYS SGRTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE 300 ILRFHCTTFT CSLGLAGATS LCRSSPQQCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKA 360 QTPLPGGGGG EKRAMLVCRV VAGRVKKLVN SSNSSEESGC DSVSSCSDLD ELSVFNPLAI 420 LPCFVVMYAV ATET |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250862 | 0.0 | AK250862.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154431.1 | 0.0 | uncharacterized protein LOC109739792 | ||||
TrEMBL | A0A3B6HWB0 | 0.0 | A0A3B6HWB0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R3F0 | 0.0 | A0A446R3F0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_37D98E743.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-65 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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