PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_3193F9838.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 365aa MW: 40503.6 Da PI: 8.7957

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_3193F9838.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.9	2e-12	323	361	4	42
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 lrWt +LH+ Fveave GG+ +A P ++++ m+ g+t Traes_4AL_3193F9838.2 323 LRWTDDLHKIFVEAVEYQGGPYEAKPTAVKQRMEAMGVT 361 89************************9997776655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF51735	5.65E-41	6	247	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	3.1E-14	6	23	IPR002347	Short-chain dehydrogenase/reductase SDR
Pfam	PF00106	3.2E-36	7	221	IPR002347	Short-chain dehydrogenase/reductase SDR
CDD	cd05233	1.68E-44	7	244	No hit	No description
Gene3D	G3DSA:3.40.50.720	5.0E-46	7	244	IPR016040	NAD(P)-binding domain
PROSITE pattern	PS00061	0	165	193	IPR020904	Short-chain dehydrogenase/reductase, conserved site
PRINTS	PR00081	3.1E-14	178	197	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.1E-14	202	219	IPR002347	Short-chain dehydrogenase/reductase SDR
Gene3D	G3DSA:1.10.10.60	1.6E-9	320	365	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0034256	Molecular Function	chlorophyll(ide) b reductase activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVTNDLKK EFGEQHVWGT 60 VCDVREGKDV KGLVDFARDK LEYIDIWVHS HPSLTKHLHC TCTFIPINNA GSNAYSYKPL 120 VETSDEALIE VITTNTLGLM LCCREAINMM WNQPRGGHIF NIDGAGSDGR PTPRFAAYGA 180 TKRSVVHLTK SLQAELQMNE VNNVVVHNLS PGMVTTDLLM SGATTKQAKF FINILAETPD 240 VVADYLVPNI REIPTKQSMK PTYIRFLTGL KAYSRIFSRI AFGARRNKMM SNDKPTENSD 300 SSYMSGILAS CLLRAMQPTR SLLRWTDDLH KIFVEAVEYQ GGPYEAKPTA VKQRMEAMGV 360 TGLTI

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVTNDLKK EFGEQHVWGT  60
VCDVREGKDV KGLVDFARDK LEYIDIWVHS HPSLTKHLHC TCTFIPINNA GSNAYSYKPL  120
VETSDEALIE VITTNTLGLM LCCREAINMM WNQPRGGHIF NIDGAGSDGR PTPRFAAYGA  180
TKRSVVHLTK SLQAELQMNE VNNVVVHNLS PGMVTTDLLM SGATTKQAKF FINILAETPD  240
VVADYLVPNI REIPTKQSMK PTYIRFLTGL KAYSRIFSRI AFGARRNKMM SNDKPTENSD  300
SSYMSGILAS CLLRAMQPTR SLLRWTDDLH KIFVEAVEYQ GGPYEAKPTA VKQRMEAMGV  360
TGLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuy_A	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_B	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_C	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_D	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_E	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_F	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_G	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
4iuy_H	6e-15	7	218	30	215	Short chain dehydrogenase/reductase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Required for chlorophyll b degradation.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by dark treatment. {ECO:0000269\|PubMed:18778405}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369003	0.0	AK369003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181142.1	0.0	chlorophyll(ide) b reductase NOL, chloroplastic-like
Swissprot	Q84ST4	0.0	NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBL	A0A446WML8	0.0	A0A446WML8_TRITD; Uncharacterized protein
STRING	Traes_4AL_3193F9838.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10938	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06020.1	4e-08	G2-like family protein

Publications ? help Back to Top
Kusaba M, et al. Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence. Plant Cell, 2007. 19(4): p. 1362-75 [PMID:17416733] Sato Y, et al. Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice. Plant J., 2009. 57(1): p. 120-31 [PMID:18778405] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]