PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_276CC5E27.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 784aa    MW: 85099.9 Da    PI: 4.3053
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_276CC5E27.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12181222346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT eE +ll++a + +Gg+ W+ Ia+++  ++t  qc +++++
  Traes_4AL_276CC5E27.1 181 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKTQCMLHFLQ 222
                            7*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093412.129152IPR007526SWIRM domain
SuperFamilySSF466891.34E-5344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.106.0E-5447IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM002912.1E-8119163IPR000433Zinc finger, ZZ-type
PROSITE profilePS501359.789119165IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.47E-11121160No hitNo description
PfamPF005694.4E-8122158IPR000433Zinc finger, ZZ-type
CDDcd023363.84E-20123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129321.06177228IPR017884SANT domain
SuperFamilySSF466894.49E-13178231IPR009057Homeodomain-like
SMARTSM007172.8E-13178226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-9179221IPR009057Homeodomain-like
PfamPF002496.5E-12181223IPR001005SANT/Myb domain
CDDcd001670.00273199223No hitNo description
PfamPF164958.6E-21671749IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MMKFHANPQL QLEPKDLAEL SVGEVDARQE VFDFLDHWGL INFHPFPPAG LEESKPEESQ  60
SDSRNEEKAS LIEKLFKFEP VQSYMIPLPN KGEGEIPVPL PTLLPDPVLV EDVIAAAEPS  120
VEYHCNSCSV DCSGKRYHCR TQADFDLCSN CYNEEKFDGG MSKTDFILMD STEVSGARGT  180
SWTDEETLLL LEALEIFGGK WTEIAEHVAT KTKTQCMLHF LQMQIEDRFH DGDDIHQNIH  240
ESTEQALVEK STPEVPEKME TEEKVEGKDT KDEKPSEKTE GNHTEEKTEE GSVVENKDAK  300
NSGGADSVTT PNVDEPKPSS DTDLAKENSV NLDTSEKNAP DDAIVISGEN ASNDAIDILK  360
SAFEAVGNFP GHEGSFADAG NPVMALAAFL AGLVEDDNAT TSCRSSLKAI SEDSPALQLA  420
SRHCYILEDP PSDLKDIFVT VSNTNKDEDQ AKGEDQAKGE DQAKDEHMVI DSTGTEKKDI  480
NVKEENTVSV EKQNSPSISP KDHKESDTKN VSCDDEAPTV EPKSNKAKET DDPVPLVDKG  540
ASNDTKVPSS STKDSVAPEN NANGCGLSAS QEVVAGSTTC ATNPELLKDK PSSEVEPDDD  600
SPSQGKIELN KTEDAVAAPT AVQEDEETHT LGNGKLEEPN SAENVPADGE MVSRVTAEHN  660
DSLTRLKRAA ATAVSAAAAK AKLLAEQEED QIRRLAALVV EKLLQKTEAK MSLFADVEHV  720
ALRTREYTEK TRKKLLMERN AIIAARMGAL PSRPNQQGAA GNRLPPGYGA PAVRPPNAMP  780
RPSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628980.0AK362898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166067.10.0SWI/SNF complex subunit SWI3D isoform X1
TrEMBLA0A446R7V50.0A0A446R7V5_TRITD; Uncharacterized protein
STRINGTraes_4AL_276CC5E27.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]