PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_24A54C8BA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1182aa    MW: 130332 Da    PI: 5.2738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_24A54C8BA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002410721097123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                             ++C+   C+++F ++ +L+ H r+ +
  Traes_4AL_24A54C8BA.2 1072 FQCEidFCDMTFESRAELRAHERNiC 1097
                             89********************9877 PP
2zf-C2H210.90.001511251149123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                             +kCp   Cg++F+     + Hir+H
  Traes_4AL_24A54C8BA.2 1125 FKCPwdGCGMTFKWLWAQTEHIRVH 1149
                             89*********************99 PP
3zf-C2H214.10.0001411551181123
                             EEET..TTTEEESSHHHHHHHHHH..T CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                             y+C+  dCg++F+  s++ rH r+  H
  Traes_4AL_24A54C8BA.2 1155 YECSvpDCGQTFRYVSDYSRHRRKfnH 1181
                             89999******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118416.618164IPR003347JmjC domain
PfamPF023731.6E-13147IPR003347JmjC domain
SuperFamilySSF511971.7E-9960No hitNo description
SMARTSM003551310721094IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.75710951124IPR007087Zinc finger, C2H2
SMARTSM00355510951119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010971119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-611011125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.37E-1611061159No hitNo description
PROSITE profilePS5015713.02711251154IPR007087Zinc finger, C2H2
SMARTSM003552.5E-411251149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-1211261149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011271149IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-611501178No hitNo description
Gene3DG3DSA:3.30.160.605.7E-1111501177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03611551181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.57211551182IPR007087Zinc finger, C2H2
PROSITE patternPS00028011571181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1182 aa     Download sequence    Send to blast
MSPEVIVAAG LPCCRLVQHP GEFVVTFPRA YHVGFSHGFN CGEAANFATP QWLKFAKEAA  60
VRRAVMNYLP MLSHQQLLYL LAVSFISRTP RELLYGIRTS RLRDRRKEER ELLVKREFLQ  120
DMISENELLC AFLKKKLIEN AVLWEPDLLP SSTALHSCSS GPKAPLKVDD VHSIESVPKE  180
NSSSDDIASR AGIQPKCMSM DSKSSDAMSA AEAQKLDTDT DDDGDLPFDL SIDSGSLTCV  240
ACGILGFPFM AILQPSKKAL EDMSLVDIER FKLNCEKENH SNAIPCSPDD SISGHPVIAK  300
RPSSPVAQSN FSHQNAESDK DGVGLDGPLL PHNNSAHSCN SENTLNPGIN TETTETKIPS  360
ARFGIEFSKQ TGRGDIDAQT TESCGNTVDW NITSAFVRPR IFCLQHALEI GELLEGKGGA  420
HALIICHADY TKLKALAISI AEEIEFQFDC KDVPLANASK SDLHLINISI DDEGYKEDER  480
DWTTQMGLNM KYFAKLRKET PGCQEQPPLS FWKRLDISDK PSPISVVPNL KWLCRRARTP  540
YRVVGYAASR NATVGRDVVS PAVTKAEMGT SGNAYENAKE QRTAEQDAPL EPSRLQEADD  600
VADMHTCSED IDQDMHCLIG SKRQRTAEQN APLQPSRLQE ADDVVDMHTC SVDNDQDMHR  660
LIGIPVAAAE YPMMHQVCEG TVSVSTCELD DLVSASTSDD SICSAHSQDS PGVSDDFTTE  720
QQCVQSDELT SSVAMSAQQF LVDGSMTAED SSNHENLGSY NVTSECKDKQ LQVQQEQENI  780
ELCNNAGRNL AAAVQVNSGH FGDKAVNLKS AIPTESQHEY PKRDAIVLEG MQAALTTVVS  840
GENRNSVNTE LDSLGILLGA LAEESILADV PGKDEVDDAS LTLMTLASID QSAGDVAHNE  900
VIETSSSSVG ASISCKGRTL SNLASDGSLR IQNAEIQNKQ ENAEEVGAWN CQGLKNSRGI  960
LDSSANSLSD TGKSSGTPKA YQPDILSRSI GSSKRTSIIC YVRRKRKQKR KRESELSTSN  1020
SQSFGSFARA PCERLRPRRK PAVIEEPAEQ IETAKPSAAA TKGKRSKVVE LFQCEIDFCD  1080
MTFESRAELR AHERNICTDE SCGKRFQSHK YLKRHQCVHR DERPFKCPWD GCGMTFKWLW  1140
AQTEHIRVHT GERPYECSVP DCGQTFRYVS DYSRHRRKFN HY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-481072118123132Lysine-specific demethylase REF6
6a58_A2e-481072118123132Lysine-specific demethylase REF6
6a59_A2e-481072118123132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110011008VRRKRKQK
210051012RKQKRKRE
310351039RPRRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157215.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A446RFR60.0A0A446RFR6_TRITD; Uncharacterized protein
STRINGTraes_4AL_24A54C8BA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-54C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]