PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_2334B226E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 175aa MW: 19814.1 Da PI: 7.6352 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 95 | 128 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ e++ LA+++gL+ +q+ +WF N+R ++ Traes_4AL_2334B226E.1 95 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 128 69*****************************985 PP | |||||||
2 | ELK | 34.6 | 4.2e-12 | 48 | 69 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +Ll+KYsgyL+sL+ +s Traes_4AL_2334B226E.1 48 ELKSHLLNKYSGYLSSLWRDLS 69 9*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.655 | 48 | 68 | IPR005539 | ELK domain |
SMART | SM01188 | 1.5E-6 | 48 | 69 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.2E-9 | 48 | 69 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.455 | 68 | 131 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-19 | 69 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.5E-12 | 70 | 135 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-26 | 73 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.09E-13 | 77 | 131 | No hit | No description |
Pfam | PF05920 | 2.7E-16 | 88 | 127 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
HPCLLDCQCD KADDHSYVEG GGSSEDEQEI GDVGGLPEIT SHCAEDKELK SHLLNKYSGY 60 LSSLWRDLSK KKKKGKLPRD ARQKLLHWWQ LHYRWPYPSE LEKAALAEST GLDAKQINNW 120 FINQRKRHWK PTPPAMEYMS QQQHPYGGPS SSSSAPFLTT DGHYFAGGSA YPRGP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035205 | 1e-118 | BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds. | |||
GenBank | BT040622 | 1e-118 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. | |||
GenBank | KJ727571 | 1e-118 | KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175441.1 | 4e-97 | homeobox protein knotted-1-like 4 | ||||
Swissprot | Q75LX7 | 5e-77 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A446RAC9 | 1e-117 | A0A446RAC9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_2334B226E.1 | 1e-128 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-46 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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