PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4AL_1C649DD2E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 85aa MW: 9615.08 Da PI: 8.2128 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 54.9 | 1.9e-17 | 34 | 85 | 4 | 52 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQk 52 lrWt +LH+ F+eave GG+ + P ++ +e+m+v gLt+ ++kSHLQ+ Traes_4AL_1C649DD2E.1 34 LRWTDDLHKIFLEAVEYQGGPYEVKPTAVkekMEAMGVTGLTIWNIKSHLQR 85 89************************88844467889**************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.4E-9 | 29 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 33 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-14 | 34 | 84 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 85 aa Download sequence Send to blast |
MSNGKPTYNS DSSYMSSIPV CCFLRAMQPT SSLLRWTDDL HKIFLEAVEY QGGPYEVKPT 60 AVKEKMEAMG VTGLTIWNIK SHLQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181145.1 | 5e-51 | protein PHR1-LIKE 3-like isoform X3 | ||||
TrEMBL | A0A446R7V0 | 2e-57 | A0A446R7V0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_1C649DD2E.1 | 5e-59 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12730.1 | 6e-13 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|